Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0850 ATGCCGAAGCTAAGAGATCGTGTGTATGTTGTTGTGCTGTTCTGTTGCTGCTCTATGCTTCTTACTGTTGATGCAAGCACTGACGCATTAGAAGTTCAAGCATTGCTCGCAGTAAAGAGGAGTCTAATTGATCCTAAGGGTAATCTTAAAAATTGGAATAGGGGAGATCCTTGCACATCTAATTGGACTGGAGTTGTATGCTTCTATTCTAATGGAACAGTTGGAAACTTACATATCAAAGAGCTTCAGTTGTTGAATATGAACCTATCAGGAAATTTAGCCCCGGAGATCAGCCTATTATCTCGACTTGAGAAATTAGATTTCATGTGGAATGACCTAACTGGTACAATTCCAAAGGAGATTGGCAACATTGCGTCGATGGAATTCTTACTCTTAAATGGAAACAGACTATCAGGTCCTCTACCAGATGAGCTCGGTTACCTTAAAAATCTCAATAGATTTCAAATAGATCAGAACCAGATTTCTGGGGAAATCCCAAAATCATATGCTAACTTGATCAGTGTGAAGCATTTGCATTTCAACAACAATACGCTTAGTGGTGAAATTCCACCTGAGCTTTCCAAATTACCCAAGCTTCTTCACCTGCTTTTGGATAACAATAATATGTCAGGTCCTCTGCCACACGAATTTTCCACCTCACAGACTTTACGCATATTGCAACTCGATAACAACTTTTTTGAAGGTCCAATTCCTGCATCTTATGAAAACCTTTCGACATTGGTTAAACTAAGTCTTAGGAATTGCAGCTTGGAGGGACGTATTCTTGATTTTAGCATGGTTGCAAACCTCAGTTACTTAGATCTTAGCTGGAATCGTTTTACTGGACCAATACCACCAACAAAACTCTCTTCTAATATGACGACAATAATTTTGTCACACAATCAGCTGAATGGATCTATACCCAGTAGTTTCTCCGATCTTCCTATCCTCCAGAGACTGTCACTTGAGAATAACTTTCTGAATGGTTCTGTACCTTCTGCAATATGGCAGAAGACGTCCTTCAGTACAAGTGATAGACTTATAATTGATCTTCGAAACAATTTGCTTTCTGACATTCCCGGAAACACAAAACCTCCAGCTAATGTCACCCTATGGCTTGCAGGAAATCCTATCTGTAAAAGTTTTAGTGGACAAAATTTTGACCAGTTCTGTGCATCTAAAATTGAAAAGGACGAGCTACATAAAATCTCAAGGAACTCTTCTGAAGAATGTCCTGTTAGAGGTTGCCCAACAGATAAATTTTTCGAATATGTCCCAGGCACTCCTGACCCATGCTTTTGTGCATCACCTCTTGGGATTGGATATAGGCTGAAGAGTCCTAGTTTTTCTTATTTTCCCCCGTACATGAATTTACTTCAGGTGTATCTAACAATGAATCTCAATTTGAGTGTGCATCAAGTGTTCATCGATTCATATGTTTGGGAAGGATCTCGCCTGAGGATGTTCTTGAAGATTTATCCATCATTCAACAGTGAGACTAGTATGTTAAATAAAACTGAGGTGGATCGAATTACAGAACAATTTATGTCATGGGATTTTCCTCGTGATGACTTCTTTGGCCCATACGAGCTTCTCAACTTCACGTTCCCTGGCTCCTTTTCTACTGTTATTATTGAGACACCGCAGATGGGCATTCGTGTGGGCATCTTAGCAGCCATTATAATTGGTTCTGTTACCTGTATTGTTCTGCTCATAGCTGTAACCGTACTTCTGACAAGACGCTTCAGTTACCATCACAATCTGTCAAGGAAAAACTTTTCTTCTAAGATTGCTCTGAAAATTGATGGTGTAAAAGACTTCTCTTTCAAAGAAATGCAGTCAGCTACTGGAAATTTTAATAAATCTACTCAAGTTGGCCAAGGCGGTTATGGCAAGGTCTATAAAGGCATATTATCAGATACTTCAGTTGTTGCCATTAAACGTGCAGAAGAAGGATCCTTACAAGGCCAAAAAGAATTTTTGACGGAGATTGAACTCTTATCAAGATTACATCATCGGAACTTAGTGTCACTTATTGGGTATTGCGATGAAGAAGGGGAGCAAATGCTGGTTTATGAATTCATGCCAAATGGAACTTTGCGGGAATGGATTTCTGCCAAAACTAAGGGGGGCCTTAATTTTGCTATGAGACTACAAATTGCCCTGGGTTCAGCCAAAGGTATACTTTATCTCCATACTGAAGCAAATCCTCCTATATTTCACCGAGACATCAAGGCTAGCAACATACTTCTTGATTCCAAGTTTACTGCCAAAGTGGCTGATTTCGGATTGTCTCGGCTTGCTCCTGATCTCGATTGTGAAGGGGCTGTTCCTGGACATATATCTACTGTTGTGAAGGGTACCCCAGGTTATCTTGATCCAGAGTACTTTTTGACTCATAAATTGACAGACAAAAGTGATGTTTATAGCCTAGGAGTTGTATTTTTGGAGCTCTTGACGGGCATGCACCCCATTTTTCATGGAAAAAACATTGTTCGTGAGGTGAAAATGGCTCATCAGCTGGGCACCACTCTATCTATTGTAGACTGCAGATTGGGTTCTTACCCATCCGAGTGCTTAGAGAAGTTTGTTGCTTTGGCTCTGAGTTGTTGTCACGACAAGCCAGAAGAGCGGCCGTCGATGCTAGTTGTGGTGAGGGAGCTGGAAAACATACTCAACATGATGCCCGTGCCAGATGATATCACCTCATATTCAGACTCTCCCCCAAAATCGAGCAGCAGACTTCCATCATCACCAACAACATCCTCCTATGTTTCTAGGGACCAGTTTGGATCAGGAAGTATTTCGGGAAGTGATCTCGTCAGTGGTGTTATGCCGACGATCAGACCTCGATAA 2856 40.93 MPKLRDRVYVVVLFCCCSMLLTVDASTDALEVQALLAVKRSLIDPKGNLKNWNRGDPCTSNWTGVVCFYSNGTVGNLHIKELQLLNMNLSGNLAPEISLLSRLEKLDFMWNDLTGTIPKEIGNIASMEFLLLNGNRLSGPLPDELGYLKNLNRFQIDQNQISGEIPKSYANLISVKHLHFNNNTLSGEIPPELSKLPKLLHLLLDNNNMSGPLPHEFSTSQTLRILQLDNNFFEGPIPASYENLSTLVKLSLRNCSLEGRILDFSMVANLSYLDLSWNRFTGPIPPTKLSSNMTTIILSHNQLNGSIPSSFSDLPILQRLSLENNFLNGSVPSAIWQKTSFSTSDRLIIDLRNNLLSDIPGNTKPPANVTLWLAGNPICKSFSGQNFDQFCASKIEKDELHKISRNSSEECPVRGCPTDKFFEYVPGTPDPCFCASPLGIGYRLKSPSFSYFPPYMNLLQVYLTMNLNLSVHQVFIDSYVWEGSRLRMFLKIYPSFNSETSMLNKTEVDRITEQFMSWDFPRDDFFGPYELLNFTFPGSFSTVIIETPQMGIRVGILAAIIIGSVTCIVLLIAVTVLLTRRFSYHHNLSRKNFSSKIALKIDGVKDFSFKEMQSATGNFNKSTQVGQGGYGKVYKGILSDTSVVAIKRAEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLREWISAKTKGGLNFAMRLQIALGSAKGILYLHTEANPPIFHRDIKASNILLDSKFTAKVADFGLSRLAPDLDCEGAVPGHISTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPIFHGKNIVREVKMAHQLGTTLSIVDCRLGSYPSECLEKFVALALSCCHDKPEERPSMLVVVRELENILNMMPVPDDITSYSDSPPKSSSRLPSSPTTSSYVSRDQFGSGSISGSDLVSGVMPTIRPR 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6038184 6055232 + evm.model.ptg000007l.850 HCH9g0850 551482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0850 951 Gene3D Ribonuclease Inhibitor 29 286 IPR032675 -
HCH9g0850 951 Gene3D Phosphorylase Kinase; domain 1 589 694 - -
HCH9g0850 951 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 695 904 - -
HCH9g0850 951 CDD STKc_IRAK 625 891 - -
HCH9g0850 951 Pfam Leucine Rich Repeat 175 196 IPR001611 GO:0005515(InterPro)
HCH9g0850 951 Pfam Leucine Rich Repeat 269 286 IPR001611 GO:0005515(InterPro)
HCH9g0850 951 Pfam Leucine Rich Repeat 127 148 IPR001611 GO:0005515(InterPro)
HCH9g0850 951 Pfam Leucine Rich Repeat 292 314 IPR001611 GO:0005515(InterPro)
HCH9g0850 951 Gene3D Transferase(Phosphotransferase) domain 1 695 901 - -
HCH9g0850 951 SMART serkin_6 619 895 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0850 951 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 29 190 - -
HCH9g0850 951 MobiDBLite consensus disorder prediction 904 941 - -
HCH9g0850 951 Pfam Protein kinase domain 620 884 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0850 951 Gene3D Ribonuclease Inhibitor 287 413 IPR032675 -
HCH9g0850 951 PANTHER RECEPTOR-LIKE PROTEIN 55 44 889 - -
HCH9g0850 951 FunFam Leucine-rich repeat protein kinase family protein 583 694 - -
HCH9g0850 951 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
HCH9g0850 951 SUPERFAMILY Protein kinase-like (PK-like) 605 923 IPR011009 -
HCH9g0850 951 SUPERFAMILY L domain-like 44 382 - -
HCH9g0850 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0850 951 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524(InterPro)
HCH9g0850 951 MobiDBLite consensus disorder prediction 899 951 - -
HCH9g0850 951 ProSiteProfiles Protein kinase domain profile. 619 892 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0602 HCH-Chr11:13209983 HCH9g0850 HCH-Chr9:6038184 2.80E-95 dispersed
HCH11g0647 HCH-Chr11:28098178 HCH9g0850 HCH-Chr9:6038184 4.00E-97 dispersed
HCH3g1512 HCH-Chr3:53092133 HCH9g0850 HCH-Chr9:6038184 2.30E-206 dispersed
HCH9g0850 HCH-Chr9:6038184 HCH8g0750 HCH-Chr8:44129632 3.10E-65 dispersed
HCH9g0843 HCH-Chr9:5967702 HCH9g0850 HCH-Chr9:6038184 1.70E-65 proximal
HCH12g0194 HCH-Chr12:1075281 HCH9g0850 HCH-Chr9:6038184 9.00E-35 transposed
HCH7g1113 HCH-Chr7:43847739 HCH9g0850 HCH-Chr9:6038184 3.60E-49 transposed
HCH13g0628 HCH-Chr13:4892828 HCH9g0850 HCH-Chr9:6038184 1.90E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81774 PF00069 Pkinase 3.30E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0850 - - - 0.0