Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0858 ATGGAAGCGTCTGGTAGCGACCCCGATTCTCATAGACCTGTTTCTACCAGTAGTAGTTCAAGGAGATTAGGAATGTTATCTGCCTCAAATATAATTCAGGCTCCACTTTCGGCGTTATTAGAGTATTCCGGTCTTCTTCGTGGTCGTTCAAGTCATCAAGAATCTGAGTCTTTGATTAGTGCTCGTTTACCTTCGGGTTTTCGGGATCACTTTCGTAGTCAGATTGAAGAGTCTTCGGCTGCTACTAATGATGGGGAGGTTTCGATTAGGATAATTGGGGCGGGAGAACAAGAGCACGGTAGGGATGGTGCTGGTTTAGTTGTTGGGCAAGGGAGGGAAGTTGGTGGTCAGAATGAGGTGTCTTCTCAACTGGTTCCCGGGTTGGCATCGGAGCTTAGCCAGGGGGATCCGACTACTGATCGCGGTTCAAGAGAGGGCGTTCCTCAACAGCTAAGTGTGGGTTCTGATGGAGATGTTATGGAGACAGCTGGGGGAAATGGTAGGGATTCCTCGTACCAGAGGTATGACATTCAACAGGCTGCTCGGGGGATTGAGCAGGTCCTCCCGTTTAGTTTTCTTTTATTGGTCGTGTTCATTCGACAACATTTGCAAGGCTTCTTTGTGACAATTTGGATTGCTGCTTTCATGTACAAGTCAAATGATATTTTGCGAAAACAGACAGCTTTGAAGGGAGAGAGAAAAATCTCTGTTTTGATTGGCATTTCTCTTGCATTCACTATTCATGTGGTTGGTGTGTACTGGTGGTATCAGAATGATGATCTTTTATATCCATTGGTTATGCTTCCTCCCAGATCAATACCTCCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGTCAGGCGGTGATGGTGGTCAAGTGTGTTCTATTAATGTATTACAAGAACAGCAGGGGCCGTAATTATCGTAAACAGGGTCAAATGCTGACTTTAGTTGAATATCTGCTACTATTATACCGTGCCTTGCTGCCTACACCAGTATGGTATCGTTTCTTTTTGAACAAAGAATATGGGAGTCTATTCTCATCACTCTTGACTGGACTGTATTTAACTTTTAAGCTCACATCTGTTGTTGAAAAGGTGCAATCTTTCTTTGCTTCTTTGAAAGCATTGTCACGTAAAGAGGTGCATTACGGGGCATACGCAACTTCAGAGCAGGTTAGTGCAGCTGGTGATTTGTGTGCCATTTGCCAAGAGAAGATGCATGCTCCTATCTTACTTCGTTGTAAACACATATTTTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAACGAACATGTCCACTGTGCAGGGCTTTGGTTAAACCTGCCGATCTCAAGTCGTTTGGCGATGGATCAACAAGTCTGTTTTTCCAGGTTTTTTAA 1401 44.25 MEASGSDPDSHRPVSTSSSSRRLGMLSASNIIQAPLSALLEYSGLLRGRSSHQESESLISARLPSGFRDHFRSQIEESSAATNDGEVSIRIIGAGEQEHGRDGAGLVVGQGREVGGQNEVSSQLVPGLASELSQGDPTTDRGSREGVPQQLSVGSDGDVMETAGGNGRDSSYQRYDIQQAARGIEQVLPFSFLLLVVFIRQHLQGFFVTIWIAAFMYKSNDILRKQTALKGERKISVLIGISLAFTIHVVGVYWWYQNDDLLYPLVMLPPRSIPPFWHAIFIIMVNDTLVRQAVMVVKCVLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFASLKALSRKEVHYGAYATSEQVSAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLKSFGDGSTSLFFQVF 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6106552 6113202 + evm.model.ptg000007l.858 HCH9g0858 551490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0858 466 Pfam Ring finger domain 404 443 IPR001841 -
HCH9g0858 466 SUPERFAMILY RING/U-box 400 448 - -
HCH9g0858 466 MobiDBLite consensus disorder prediction 1 22 - -
HCH9g0858 466 CDD RING-HC_RNFT1-like 403 443 - -
HCH9g0858 466 ProSitePatterns Zinc finger RING-type signature. 420 429 IPR017907 -
HCH9g0858 466 MobiDBLite consensus disorder prediction 129 170 - -
HCH9g0858 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 453 IPR013083 -
HCH9g0858 466 ProSiteProfiles Zinc finger RING-type profile. 405 443 IPR001841 -
HCH9g0858 466 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 10 466 IPR044235 GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:1904294(InterPro)
HCH9g0858 466 SMART ring_2 405 442 IPR001841 -
HCH9g0858 466 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0256 HCH-Chr1:42052523 HCH9g0858 HCH-Chr9:6106552 5.40E-156 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0858 - - - 0.0