Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0868 ATGGAGAAATACGAAAAACTCGAAAAAGTCGGAGAAGGAACGTACGGAAAAGTCTACAAAGCGAAAGACAAAGAAACCGGCAACCTCGTCGCTCTTAAAAAAACCCGTCTCGAAATGGACGAGGAAGGCGTTCCCCCGACCGCTCTTCGCGAAGTTTCTCTTCTTCAATTACTCTCTCAATCTCTCTACGTCGTTCGTCTTCTCTGCGTGGAGCACGTCCATCATCACAAATCCGGTAAACCCCTTCTTTACTTGGTTTTCGAGTATCTCGATACCGATTTGAAGAAATTCATCGATTCTCATCGTAAAGGACCAAACCCTAGGCCTCTTTCTACTTCCCTTATTCAAAGCTTCCTCTTTCAGCTTTGTAAGGGTGTTGCTCATTGTCACAGTCATGGTGTTCTTCACCGTGATTTAAAGCCTCAGAATTTGCTTCTTGATCAGAGTAAAGGGATTTTGAAAATTGCTGATCTTGGTCTTGGTAGGGCTTTTACTGTTCCTCTCAAGAGTTATACTCATGAGATTGTTACGCTCTGGTATCGTGCTCCTGAGGTTTTGCTTGGATCTACTCATTATTCTACTGCTGTTGATATGTGGTCTGTTGGCTGCATTTTTGCCGAAATGGTGAGAAGGCAGGCTCTGTTTCCTGGAGATTCTGAGTTCCAACAGTTGCTCCACATTTTTAGGCTGCTAGGTACTCCTACTGAGAAGCAATGGCCCGGAGTTAATTCTCTGCGAGATTGGCATGTTTACCCTCAATGGGAACCTCAGAATCTTACACGTGCAGTTCCAGCCCTGGAACCTGATGGGATTGACCTTCTCTCGAAAATGCTTCAATATAACCCGGTAGATAGAATTTCAGCCAAAGCAGCATTGGATCACCCATATTTTGACAGCCTCGACAAGTCTCAATTTTAG 918 44.44 MEKYEKLEKVGEGTYGKVYKAKDKETGNLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSLYVVRLLCVEHVHHHKSGKPLLYLVFEYLDTDLKKFIDSHRKGPNPRPLSTSLIQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQSKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHIFRLLGTPTEKQWPGVNSLRDWHVYPQWEPQNLTRAVPALEPDGIDLLSKMLQYNPVDRISAKAALDHPYFDSLDKSQF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6216658 6219055 - evm.model.ptg000007l.868 HCH9g0868 551500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0868 305 PANTHER CELL DIVISION PROTEIN KINASE 3 297 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
HCH9g0868 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g0868 305 Gene3D Transferase(Phosphotransferase) domain 1 93 304 - -
HCH9g0868 305 FunFam Cyclin-dependent kinase B2,2 1 91 - -
HCH9g0868 305 FunFam Cyclin-dependent kinase 2 93 304 - -
HCH9g0868 305 SUPERFAMILY Protein kinase-like (PK-like) 1 300 IPR011009 -
HCH9g0868 305 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
HCH9g0868 305 SMART serkin_6 4 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0868 305 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
HCH9g0868 305 Pfam Protein kinase domain 4 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g0868 305 ProSiteProfiles Protein kinase domain profile. 4 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0031 HCH-Chr12:197756 HCH9g0868 HCH-Chr9:6216658 2.90E-121 dispersed
HCH1g0733 HCH-Chr1:56132964 HCH9g0868 HCH-Chr9:6216658 3.90E-96 dispersed
HCH4g0596 HCH-Chr4:3944903 HCH9g0868 HCH-Chr9:6216658 7.50E-35 dispersed
HCH8g0160 HCH-Chr8:6049572 HCH9g0868 HCH-Chr9:6216658 1.20E-48 dispersed
HCH9g0760 HCH-Chr9:5144578 HCH9g0868 HCH-Chr9:6216658 8.20E-42 dispersed
HCH9g0868 HCH-Chr9:6216658 HCH9g1407 HCH-Chr9:46468642 2.00E-58 dispersed
HCH9g0868 HCH-Chr9:6216658 HCH4g0096 HCH-Chr4:516201 4.00E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81775 PF00069 Pkinase 2.50E-66 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0868 K07760 - csv:101204557 589.341