Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0872 ATGGCTGCTTTTGCTTATGTTTTGTTCGATAATAGTAATAATAATAATACTTCTTACGACAACAGCCGAGGTTGTAGTCCACTGACTAGCGGCGGCGGTTCCACCACCAGCGACGAACAACAACAACAACAACCGCCGCCACCGCAAAGGTTGGCTAACGGCGGGAAAATGGTGAGGAAGAGAATAGCTTCGGAAATGGAAATAGAAGGACTAAACCCTAATAATAATAACGCAGCGGGTTCCGGCGCCGTGCATCCGCGTTTCTGCCGCCGTACCACGACGGAACGGGATTTCGCGACGGTGAATGGGAATTCCAACTACTCCACTACTACTGCTACTACTATTCAATCTTCTACAACTTTGGTGACGTCAGCAGAGGGGTCAAATTCAAATCTTATCGTTGACAGTACTACAACTACTACTAATGATAATATTATTATTCAGAATCTAAATCCTGCAGTTTGTGGATTTTCTGGGCTGCCTTTATTTCCTCCTGAATCTAATCAGAACCAGAGATATAGTAGTGAAAACGACAACTCCTTCCCGGTTTTTAACTCCGGTGGTGGTGGTGCTGGTGGGTTTTCTTCTCTCTCCGCCGTTGGTTCCGCCATGGATGATTCTTCCGCCACCGCGTGGATTGACGGTATTATTAAAGATCTTATTAACAGTTCTTCTAATATTTCTATTCCTCAGCTTATTCAAAACGTCAGAGAAATTATCTATCCTTGTAATCCGAATCTCGCTAATCTTTTGGAGTTCAGGCTCCGTTCTTTGACGGACCCTAATTTCACCGCCGATGACCGGATTAGAAGACTTCCTTTACCGTTACCGTCACCGTCTCCTTCGCCGTTACCGGTAGTCGGCGTGAGGCCATACAATCACGGAGGGAATCCTAATCTCTCTACTTTTCCCTCACAGTCTCCGTATGTGAATCAAGATTCGTTTTTGCCATGGACGGGGAATCCTCCACCTCCGACGCCGCCTCCCCAGCAGCAGTCAGTTACCGGTACTCCCACGGCCGCGGGTGAAGAGCCGATTCAGCGGGTTCCCGGTCATCTGTCGTCGGTTGTTGTAGAATCTTCAAAGCAACAAGAACAGCAAAACCCTAATCCGGGTACCGGTGGGAACACGAACCCGACGACGACGGCGTTATTGATAAGAGAGATAAAAGAGGAAATGAGGCAGCAAAAGAGAGATGAAGAAGGATTACATCTCTTAACATTGCTTCTGCAATGTGCAGAAGCTGTTTCTGCTGATAATTTAGAAGAAGCAAACAAGATGTTGTTAGAAATTTCAGAACTTTCAACGCCATTTGGAACATCAGCTCAAAGGGTAGCTGCATATTTCTCAGAAGCAATGTCAGCCAGGCTAGTGAGTTCATGTCTCGGAATTTACGCGGCATTGCCACCGGCATTGGTGCCGGTGACTCATAGCCAAAAGATAGCCTCAGCGTTTCAGGTGTTTAATGGGATTAGTCCATTTGTTAAATTCTCTCATTTCACAGCAAATCAAGCAATTCAAGAAGCTTTTGAAAGGGAAGAGAGAGTTCACATTATAGACTTGGATATTATGCAAGGATTGCAATGGCCAGGGTTGTTTCATATCCTTGCGTCTCGGCCCGGGGGGCCGCCATATGTACGATTAACTGGACTTGGGACTTCTAAGGAGGTTTTGGAGGGTACTGGGAAGAGGCTTACTGAATTTGCTGAGAAATTGGGGCTCCCTTTCGATTTCTTTCCGGTCGCCGAGAAGATTGGGAATTTGGATTTGGAGAGGCTGAATGTTAGTAAGAGGGAAGCTGTTGCTGTTCATTGGATGCAGCATTCTCTTTATGAAGTTACTGGGTCGGATTCTAACACACTTTGGCTTTTGCAAAGATTAGCTCCAAAAGTAGTGACTGTGGTAGAACAAGACCTGAGCCATACAGGTTCATTCCTAGGAAGGTTTGTGGAAGCAATTCATTACTACTCAGCATTGTTCGACTCATTAGGTGTCAGCTACGGTGAAGAGAGTGAGGAAAGGCATTTGGTGGAGCAGCAGTTGTTGTCGAGGGAGATCCGTAACGTGCTCGCTGTCGGAGGGCCGTCGAGGAGCGGCGAAGTCAAGTTCCAGAACTGGAGGGAGAAGCTACAGCAATCAGGATTTAAGGGAGTTTCGTTAGCTGGAAATGCAGCAACTCAGGCCACTCTCCTCTTAGGCATGTTTCCCTCTGATGGATATACGCTTGTAGAAGATAATGGAACTCTGAAATTGGGATGGAAGGATCTTTGCTTGCTTACTGCTTCTGCTTGGAAACTGCCATTTCAAGCATCAAATCCTAATCCCATTCCTCGATATTAA 2340 46.28 MAAFAYVLFDNSNNNNTSYDNSRGCSPLTSGGGSTTSDEQQQQQPPPPQRLANGGKMVRKRIASEMEIEGLNPNNNNAAGSGAVHPRFCRRTTTERDFATVNGNSNYSTTTATTIQSSTTLVTSAEGSNSNLIVDSTTTTTNDNIIIQNLNPAVCGFSGLPLFPPESNQNQRYSSENDNSFPVFNSGGGGAGGFSSLSAVGSAMDDSSATAWIDGIIKDLINSSSNISIPQLIQNVREIIYPCNPNLANLLEFRLRSLTDPNFTADDRIRRLPLPLPSPSPSPLPVVGVRPYNHGGNPNLSTFPSQSPYVNQDSFLPWTGNPPPPTPPPQQQSVTGTPTAAGEEPIQRVPGHLSSVVVESSKQQEQQNPNPGTGGNTNPTTTALLIREIKEEMRQQKRDEEGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAALPPALVPVTHSQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSKEVLEGTGKRLTEFAEKLGLPFDFFPVAEKIGNLDLERLNVSKREAVAVHWMQHSLYEVTGSDSNTLWLLQRLAPKVVTVVEQDLSHTGSFLGRFVEAIHYYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRSGEVKFQNWREKLQQSGFKGVSLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWKLPFQASNPNPIPRY 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6250684 6253511 + evm.model.ptg000007l.872 HCH9g0872 551504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0872 779 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 386 764 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009630(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0051457(PANTHER)|GO:0090610(PANTHER)
HCH9g0872 779 ProSiteProfiles GRAS family profile. 396 765 IPR005202 -
HCH9g0872 779 MobiDBLite consensus disorder prediction 274 380 - -
HCH9g0872 779 Pfam GRAS domain family 406 765 IPR005202 -
HCH9g0872 779 MobiDBLite consensus disorder prediction 318 332 - -
HCH9g0872 779 MobiDBLite consensus disorder prediction 295 317 - -
HCH9g0872 779 MobiDBLite consensus disorder prediction 354 380 - -
HCH9g0872 779 MobiDBLite consensus disorder prediction 12 55 - -
HCH9g0872 779 MobiDBLite consensus disorder prediction 12 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0958 HCH-Chr13:14118343 HCH9g0872 HCH-Chr9:6250684 4.50E-82 dispersed
HCH14g0363 HCH-Chr14:32631160 HCH9g0872 HCH-Chr9:6250684 4.10E-37 dispersed
HCH5g1321 HCH-Chr5:50121650 HCH9g0872 HCH-Chr9:6250684 2.00E-94 dispersed
HCH6g0508 HCH-Chr6:20554156 HCH9g0872 HCH-Chr9:6250684 2.60E-131 dispersed
HCH6g0938 HCH-Chr6:44180497 HCH9g0872 HCH-Chr9:6250684 4.90E-65 dispersed
HCH8g0794 HCH-Chr8:44538125 HCH9g0872 HCH-Chr9:6250684 1.70E-57 dispersed
HCH8g1450 HCH-Chr8:48990978 HCH9g0872 HCH-Chr9:6250684 3.20E-48 dispersed
HCH9g0872 HCH-Chr9:6250684 HCH9g0424 HCH-Chr9:2657757 7.10E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34174 PF03514 GRAS 2.20E-126 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0872 K27742 - csv:101205286 926.776