Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0878 ATGGTGAGTCCTATTAAGGCAGCGATCGGCGATGCTATTTTAACGGCTATGTGGGTTTTCAGTGCTTCGTCTCTAGGAGTGCTGACCGCCGTCGTGTACTCCGCCGTTGGAGGTTATGGACTTCCGCTACATCCGCTTGTTATCACGACGACTCTCGTTTTTGTTCTTGTTTTCGTTTTTAATATCATCGGCGATGCTTTGGGTGGCGCTAGCTTTAATCCAACCGCTACTGCTGCTTTTTATGCTGCCGGTCTTGGCTCCAATTCTCTCTTTTCCATGGCTCTTCGATTCCCTGCTCAGGCAGCTGGGGCGGTTGCTGGTGCTCTGGCGATTAAGGAGGTGATGCCTATACAATACAAGCATATGCTTGGTGGACCTTCTCTAAAAGTTGACCTTCAGTCTGGAGCCATAGCAGAAGGAGTTTTGACCTTTTTAATCAGTTTTGCTGTTCTTCTGATTGTGCTCAGGGGACCCGCCAGCCCAGTAATTAAAACATGGTTGCTGGCTATGGCAACTGTAGCTTTAATTGTTGCTGGTTCTAGTTACACTGGACCGTCCATGAATCCTGCAAATGCATTTGGGTGGGCCTACATAAACAACAGGCACGATACATGGGAGCAGTTGTACGTGTATTGGATCGGTCCCTTCATCGGAGCAATATTGGCTGCGTGGCTATTTCGAATCGTCTTTCCACCATCCCCAACCCCAGCTAAGCAGAAGAAGGCTTAG 729 48.7 MVSPIKAAIGDAILTAMWVFSASSLGVLTAVVYSAVGGYGLPLHPLVITTTLVFVLVFVFNIIGDALGGASFNPTATAAFYAAGLGSNSLFSMALRFPAQAAGAVAGALAIKEVMPIQYKHMLGGPSLKVDLQSGAIAEGVLTFLISFAVLLIVLRGPASPVIKTWLLAMATVALIVAGSSYTGPSMNPANAFGWAYINNRHDTWEQLYVYWIGPFIGAILAAWLFRIVFPPSPTPAKQKKA 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6304665 6307518 - evm.model.ptg000007l.878 HCH9g0878 551510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0878 242 FunFam Aquaporin SIP1-1 2 242 - -
HCH9g0878 242 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0878 242 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0878 242 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0878 242 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0878 242 PRINTS Major intrinsic protein family signature 138 156 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0878 242 PRINTS Major intrinsic protein family signature 53 77 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0878 242 Pfam Major intrinsic protein 4 226 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g0878 242 PANTHER AQUAPORIN SIP1-1 1 241 IPR044222 GO:0015250(InterPro)
HCH9g0878 242 SUPERFAMILY Aquaporin-like 4 234 IPR023271 -
HCH9g0878 242 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0590 HCH-Chr9:3974820 HCH9g0878 HCH-Chr9:6304665 1.10E-13 dispersed
HCH9g0878 HCH-Chr9:6304665 HCH9g0588 HCH-Chr9:3961959 3.20E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0878 K09875 - csv:101220534 410.994