Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0881 | ATGAACGATCTCATGACTCAATCATTCACCAGTTACGTTGATTTGAAGAAAGCAGCCATGAAAGACATTGATTTAGAAGCGGGTGATCTCGAATTGGGAACGACCCACATGGATTCCGATATGAATCGGTTCCTTGAAGAGGCAGAGAATGTAAAGAAAGAGATGGATTCCATTAGAGAGATTCTAGGGAAGCTTCAACAAGCTAATGAAGAGAGCAAATCAGCCCACAAATCAGATTCCTTGAAAGCTCTCCGTCATTCGATTAACGACGATATCGTTACTGTCCTGAAGAAGGCGAGAGAAATCCGGTCGAAACTCGAGGAAATGGACCGTGCCAATGTTGGGAAACGACGGCTTTCGGCTTCGGGGACGGCGGTTTATCGAACGAGAATTGCGGTTACTAATGGACTGAGGAAGAAGCTCAAGGAATTGATGATGGAGTTTCAGGGTTTGAGGCAGAGGATGATGACAGAGTATAAAGACAGTGTAGGGAGAAGGTATTTTACAGTGACAGGAGAGTATCCGGGAGAAGAGGTGATTGAGAAGATTATAACATCATCGGATGGAGGTGAGGAGTTTCTCGAAAAGGCGATTAAGGAACACGGAAGGGGGAAAGTCGTCGAGACGGTTGTCGAGATTCAGGACCGACACGATGCCGCCAAGGAGATAGAGAAGAGTTTGTTGGAGCTTCATCAGGTGTTTTTGGATATGGCAGTGATGGTGGAGACACAAGGGGAGAAAATGGATGATATTGAACACCATGTCCTCAATGCTTCACATTATGTCAAAGATGGTACAAAGGATTTGAAGATGGCTAAATCTTATCAGAAGAACAGCAGGAAATGCATCTGCCTTGGAATTATACTTTTGCTTGCCTTGATTCTTGTTGTTGTTATCCCAATTCTCACTAGTTTTACTACTTCTTGA | 927 | 44.01 | MNDLMTQSFTSYVDLKKAAMKDIDLEAGDLELGTTHMDSDMNRFLEEAENVKKEMDSIREILGKLQQANEESKSAHKSDSLKALRHSINDDIVTVLKKAREIRSKLEEMDRANVGKRRLSASGTAVYRTRIAVTNGLRKKLKELMMEFQGLRQRMMTEYKDSVGRRYFTVTGEYPGEEVIEKIITSSDGGEEFLEKAIKEHGRGKVVETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVETQGEKMDDIEHHVLNASHYVKDGTKDLKMAKSYQKNSRKCICLGIILLLALILVVVIPILTSFTTS | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6325198 | 6326124 | - | evm.model.ptg000007l.881 | HCH9g0881 | 551513 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0881 | 308 | SUPERFAMILY | t-snare proteins | 39 | 265 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
HCH9g0881 | 308 | Gene3D | - | 36 | 163 | - | - | |
HCH9g0881 | 308 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 210 | 272 | IPR000727 | - | |
HCH9g0881 | 308 | SMART | tSNARE_6 | 205 | 272 | IPR000727 | - | |
HCH9g0881 | 308 | Pfam | Syntaxin | 43 | 245 | IPR006011 | GO:0016020(InterPro) | |
HCH9g0881 | 308 | PANTHER | SYNTAXIN | 44 | 290 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
HCH9g0881 | 308 | SMART | SynN_4 | 36 | 160 | IPR006011 | GO:0016020(InterPro) | |
HCH9g0881 | 308 | Coils | Coil | 134 | 154 | - | - | |
HCH9g0881 | 308 | CDD | SynN | 41 | 197 | IPR006011 | GO:0016020(InterPro) | |
HCH9g0881 | 308 | Pfam | SNARE domain | 247 | 298 | IPR000727 | - | |
HCH9g0881 | 308 | Coils | Coil | 41 | 71 | - | - | |
HCH9g0881 | 308 | Gene3D | - | 205 | 305 | - | - | |
HCH9g0881 | 308 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 38 | 166 | - | - | |
HCH9g0881 | 308 | FunFam | Syntaxin 132 | 203 | 303 | - | - | |
HCH9g0881 | 308 | ProSitePatterns | Syntaxin / epimorphin family signature. | 216 | 256 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
HCH9g0881 | 308 | CDD | SNARE_syntaxin1-like | 209 | 270 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH7g0756 | HCH-Chr7:10853149 | HCH9g0881 | HCH-Chr9:6325198 | 3.20E-21 | dispersed | |
HCH9g0881 | HCH-Chr9:6325198 | HCH9g1199 | HCH-Chr9:19151029 | 5.80E-58 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH9g0881 | K08486 | - | csv:101220775 | 436.032 |