Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0881 ATGAACGATCTCATGACTCAATCATTCACCAGTTACGTTGATTTGAAGAAAGCAGCCATGAAAGACATTGATTTAGAAGCGGGTGATCTCGAATTGGGAACGACCCACATGGATTCCGATATGAATCGGTTCCTTGAAGAGGCAGAGAATGTAAAGAAAGAGATGGATTCCATTAGAGAGATTCTAGGGAAGCTTCAACAAGCTAATGAAGAGAGCAAATCAGCCCACAAATCAGATTCCTTGAAAGCTCTCCGTCATTCGATTAACGACGATATCGTTACTGTCCTGAAGAAGGCGAGAGAAATCCGGTCGAAACTCGAGGAAATGGACCGTGCCAATGTTGGGAAACGACGGCTTTCGGCTTCGGGGACGGCGGTTTATCGAACGAGAATTGCGGTTACTAATGGACTGAGGAAGAAGCTCAAGGAATTGATGATGGAGTTTCAGGGTTTGAGGCAGAGGATGATGACAGAGTATAAAGACAGTGTAGGGAGAAGGTATTTTACAGTGACAGGAGAGTATCCGGGAGAAGAGGTGATTGAGAAGATTATAACATCATCGGATGGAGGTGAGGAGTTTCTCGAAAAGGCGATTAAGGAACACGGAAGGGGGAAAGTCGTCGAGACGGTTGTCGAGATTCAGGACCGACACGATGCCGCCAAGGAGATAGAGAAGAGTTTGTTGGAGCTTCATCAGGTGTTTTTGGATATGGCAGTGATGGTGGAGACACAAGGGGAGAAAATGGATGATATTGAACACCATGTCCTCAATGCTTCACATTATGTCAAAGATGGTACAAAGGATTTGAAGATGGCTAAATCTTATCAGAAGAACAGCAGGAAATGCATCTGCCTTGGAATTATACTTTTGCTTGCCTTGATTCTTGTTGTTGTTATCCCAATTCTCACTAGTTTTACTACTTCTTGA 927 44.01 MNDLMTQSFTSYVDLKKAAMKDIDLEAGDLELGTTHMDSDMNRFLEEAENVKKEMDSIREILGKLQQANEESKSAHKSDSLKALRHSINDDIVTVLKKAREIRSKLEEMDRANVGKRRLSASGTAVYRTRIAVTNGLRKKLKELMMEFQGLRQRMMTEYKDSVGRRYFTVTGEYPGEEVIEKIITSSDGGEEFLEKAIKEHGRGKVVETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVETQGEKMDDIEHHVLNASHYVKDGTKDLKMAKSYQKNSRKCICLGIILLLALILVVVIPILTSFTTS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6325198 6326124 - evm.model.ptg000007l.881 HCH9g0881 551513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0881 308 SUPERFAMILY t-snare proteins 39 265 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH9g0881 308 Gene3D - 36 163 - -
HCH9g0881 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
HCH9g0881 308 SMART tSNARE_6 205 272 IPR000727 -
HCH9g0881 308 Pfam Syntaxin 43 245 IPR006011 GO:0016020(InterPro)
HCH9g0881 308 PANTHER SYNTAXIN 44 290 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH9g0881 308 SMART SynN_4 36 160 IPR006011 GO:0016020(InterPro)
HCH9g0881 308 Coils Coil 134 154 - -
HCH9g0881 308 CDD SynN 41 197 IPR006011 GO:0016020(InterPro)
HCH9g0881 308 Pfam SNARE domain 247 298 IPR000727 -
HCH9g0881 308 Coils Coil 41 71 - -
HCH9g0881 308 Gene3D - 205 305 - -
HCH9g0881 308 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 38 166 - -
HCH9g0881 308 FunFam Syntaxin 132 203 303 - -
HCH9g0881 308 ProSitePatterns Syntaxin / epimorphin family signature. 216 256 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
HCH9g0881 308 CDD SNARE_syntaxin1-like 209 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0756 HCH-Chr7:10853149 HCH9g0881 HCH-Chr9:6325198 3.20E-21 dispersed
HCH9g0881 HCH-Chr9:6325198 HCH9g1199 HCH-Chr9:19151029 5.80E-58 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0881 K08486 - csv:101220775 436.032