Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0887 ATGGTAGCGCCGGCGAATCGGCAGCGCCGGCGAGGCCCTGCCGTGGAAGAAGACAACGTGAAGCTGGAAACGACCAAGAACATCAAATCGATAATGAGTTTCGACCAAATGGGAATCAAAGACGACGTGCTGCGAGGAATTCATGACTATGGTTTTAAGAAACCCTCGGCCATACAACAAAAGGCCGTAAAACCCATCATCGACGGCCGAGATGTTATAGCTCAGGCTCAGTCCGGTACTGGAAAATCCTCCATGATTGCTCTCACAGTTTGTCATATAGTCAATACCTCCCACAAAGAGCGAAAGGTTCAGGCCTTGATTTTGTCTCCAACAAGGGAATTAGCTACGCAGACAGAGAAGGTGATATTGGCAATGGGTGGTTATACTAAAATACAAGCACATGCTTGTATTGGAGGCAAAAGTGTGGTTGATGATATGAAAAGGCTTAAAAATGGGGTTCATGTGGTGTCTGGAACTCCCGGGAGAGTTTGTGATATGATTAAAAGGAGAACATTGTGTACTCGTGCTGTTAAATTACTCTTCCTTGATGAATGTGATGAAATGTTGACCATGGGGTTGAAGGAACAAATTTATGACGTTTATAGATATCTCCCGCCGGATATTCAGGTTGTATTGATCTCCGCCACACTTCCTGATGAAATTTTGGAGTTAACAAAGAAATTTATGACCGATCCAATCAGGATTTTAGTCAAGCGTGATGAGTTGACATTAGAGGGCATCAAACAATTTTTTGTTGCGGTTGAAAAAGAAGAGTGGAAATTTGATACATTGTGTGATCTTTATCAATCCCTTATTATCATACAGGCCGTTATTTTCTGCAACACAAAGCGAAAGGTTGAGTGGCTAACTGAAAAATTGCGAAGCCATACTCGTACTGTTTCTCACATGCATGGAGACATGTCTCAAAAGGAGAGAGATGCAATTATGGGAGAATTCCGATCTTGTGCCACCCGTGTTCTAATCACAACAGATATTTGTGCTCGTGGGATTGATGTTGAAGGGGTGTCCCTAGTGATCAATTATGACCTCCCTAACAATCGAGAACTTTATATTCACCGTATTGGTCGATCTGGTCGTTTTGGACGCAAGGGTGCCGCAATAAATTTCGTTAAGAAAGATGAAATCAAAACCTTGCGAGACATTGAGCAATATTACAGCATCCAGATTGATGAAATGCCAGCTAACATTGCCGACCTGATATAA 1224 42.57 MVAPANRQRRRGPAVEEDNVKLETTKNIKSIMSFDQMGIKDDVLRGIHDYGFKKPSAIQQKAVKPIIDGRDVIAQAQSGTGKSSMIALTVCHIVNTSHKERKVQALILSPTRELATQTEKVILAMGGYTKIQAHACIGGKSVVDDMKRLKNGVHVVSGTPGRVCDMIKRRTLCTRAVKLLFLDECDEMLTMGLKEQIYDVYRYLPPDIQVVLISATLPDEILELTKKFMTDPIRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYQSLIIIQAVIFCNTKRKVEWLTEKLRSHTRTVSHMHGDMSQKERDAIMGEFRSCATRVLITTDICARGIDVEGVSLVINYDLPNNRELYIHRIGRSGRFGRKGAAINFVKKDEIKTLRDIEQYYSIQIDEMPANIADLI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6358946 6361554 + evm.model.ptg000007l.887 HCH9g0887 551519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0887 407 Pfam DEAD/DEAH box helicase 57 222 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
HCH9g0887 407 SMART ultradead3 51 250 IPR014001 -
HCH9g0887 407 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 235 IPR014001 -
HCH9g0887 407 SMART helicmild6 287 368 IPR001650 -
HCH9g0887 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 390 IPR027417 -
HCH9g0887 407 Pfam Helicase conserved C-terminal domain 260 368 IPR001650 -
HCH9g0887 407 FunFam ATP-dependent RNA helicase DBP5 11 240 - -
HCH9g0887 407 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 407 IPR001650 -
HCH9g0887 407 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 26 392 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
HCH9g0887 407 Gene3D - 241 407 IPR027417 -
HCH9g0887 407 CDD SF2_C_DEAD 247 377 - -
HCH9g0887 407 FunFam Eukaryotic initiation factor 4A-III 241 407 - -
HCH9g0887 407 Gene3D - 8 240 IPR027417 -
HCH9g0887 407 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 32 60 IPR014014 GO:0003724(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0399 HCH-Chr6:7813549 HCH9g0887 HCH-Chr9:6358946 3.10E-184 dispersed
HCH7g1614 HCH-Chr7:48363434 HCH9g0887 HCH-Chr9:6358946 1.00E-67 dispersed
HCH9g0134 HCH-Chr9:747231 HCH9g0887 HCH-Chr9:6358946 1.20E-51 dispersed
HCH9g0887 HCH-Chr9:6358946 HCH4g0524 HCH-Chr4:3434713 3.20E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0887 K13025 - vvi:100255368 635.18