Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0913 ATGGCGACCAAATTCTTATCTTTAGCATGTATTCGTACTCAAACCAGCCGGGATCTGACTCCACGGCCTCGTTATCCTTCTATGCCAAAATATCCAGCTGGGGTTTCCCTGCAAGAGACTAGTTTTCCAGGGACCGATACGACGGCGTTCTTTTCCGTTACGGGTATGACTTGCTCGGCTTGTGCTGGCTCCGTTGAGAAAGCTATCAAACGCCTTCCTGGGATTCGTGAAGCTGTCGTTGATGTTTTGAATGCCAAAGCTCGTGTCCAGTTTTACCCTTCTTTCGTCCATGTGGATCAAATATGTGAGGCTATTAACGATGCAGGCTTTCAAGCAGCCGTGATCGAAGATGATATGATTGAAAGATGTCGAATCCGTGTAATTGGAATGACCTGCACTTCTTGTTCCACGACTTTGGAATCTACTTTACAAGCAATTCGTGGGGTTCAGAATGCCCAAGTTGCATTAGCCACAGAAGAGGCAGAAGTTTGTTATGATCCAAGAATTTTGAGCTACAACCAGCTTCTCCAAGCTGTTGAAGATTCTGGATTTGAAGCTTTGCTTATCAGCACGGAAGAAGATATGAGCAAGATACAGTTAAAAGTGGATGGTGTGAGGACTGAGAATTCAATGAGAATGATTGGACACTCTCTTGAAGCACTTCCAGGTATCCAAGGTATCGATATTGATCCTGTGCTGAGAAAACTTTCCTTGTCTTACAAGCCAGATGTCACAGGACCTCGTAGTATGATCGAAGTGATTGAATCGACTGGATCTGGTCGATTTAGAGCATCAATATTTCCTGAAGGACAGGGTAGAGAGGCTTATAAAAAAGAGGAAATTAAGCAATATTACAGATCATTCTTATGGAGTCTGATATTTACAATTCCAATATTTTTAACCTCCATGGTCTTCATGTATATACCTGGTATTAAGGATGGACTAGATACCAAAATTGTTAATATGATGGGTGTTGGAGAGTTGCTGAGGTGGGTGCTATCAACTCCTGTGCAATTCATTATTGGAAGGCGATTCTATACTGGTTCTTACAAAGCATTGCGTCAAGGCTCTGCAAATATGGACGTTCTGATCGCATTAGGAACAAATGCAGCATACTTCTATTCAGTCTACTTGGTATTAAGATCCGCAACCTCAAGTGATTTCATGGCCACAGACTTCTTTGAGACCAGTTCCATGCTTATATCATTCATTCTCCTCGGGAAATATCTTGAGGTCTTGGCCAAGGGAAAGACATCAGAGGCTATTGCCAAGCTTATGAAGTTGGTGCCTGAAACAGCAACTTTGCTGACCCTTGATAACGATGGAAATGTCCTCAGGGAAGAAGAAATCGATAGTCGATTGATACAAAAGAATGATGTGATTAAAGTCATTCCAGGGGCAAAGGTTGCTTCAGATGGAGTTGTCACTTGGGGACAAAGTCATGTCAATGAAAGCATGATAACTGGGGAATCTAAGCCAGTGGCAAAGAGGATGGGCGATATGGTGATAGGAGGCACCTTGAATGAAAATGGAGTGCTACATGTGAAGGCAACACGTGTCGGATCTGAAAGTGCTCTTTCGCAGATTGTGCGACTCGTTGAATCCGCTCAGATGGCCAAGGCTCCAGTTCAAAAAATTGCAGATCGTGTCTCAAAATATTTTGTACCAATGGTTATTGTCTTTTCATTTACAACTTGGCTTGTCTGGTTTCTGACCGGGAAGTATGGTGGCTACCCAAAGTCCTGGATACCTTCTTCCATGGATAGCTTTGAGCTTGCACTCCAGTTCGGCATTTCGGTTATGGTCATAGCATGCCCTTGTGCTTTGGGCCTGGCAACTCCAACTGCTGTCATGGTTGGAACCGGAGTTGGTGCAACTAAAGGTGTTTTAATCAAAGGGGGCCAAGCATTAGAGAGTGCTCATAAGGTGAACTGCATTGTGTTTGACAAGACTGGAACTCTTACTGTGGGGAAGCCGGTTGTGGTCAATACAAAGCTATTAAAAAATATGGCTCTGAAAGAATTCTATGAATTAGTCGCCGCAACCGAGGTGAATAGCGAGCATCCATTGGCCAAAGCCATTGTTGAGTATGCTAAAAAGTTCAAAGAAGAGGATGAGAACCAAACTTGGCCAGAAGCCTTGGATTTTATCTCCATTACAGGTCATGGAGTTAAGGCCATTGTTCAAAACAAAGAGATAATTGCCGGAAACAAGAGTCTTATGATGGATCAGAACATCTTCATACCTGTTGAAGCTGAAGAAATATTAAAAGAAATTGAAGAAATGGCTCAAACTGGAATTTTGGTATCCATAGACAGGAAGTTGACTGGTGTTCTTGCCATATCTGACCCATTAAAACCAAGTGCACGTGATGTTATTTCCATACTTAAGTCAATGAAAGTTAAAAGCATCGTGGTGACAGGCGATAATTGGGGGACAGCAAAATCCATAGCCAAGGAGGTCGGAATTGATGACATAATTGCAGAAGCCAAACCCGAGCAGAAAGCAGAAGAAGTGAAGAAGTTGCAGTCTTTGGGCTACACGGTGGCAATGGTGGGAGATGGCATCAACGACTCGCCGGCACTCGTGGCTGCAGATGTAGGGATGGCAATTGGTGCGGGCACAGACATCGCCATCGAGGCAGCTGACATAGTTCTCATGAAAAGCAACTTGGAGGATGTCATAACAGCCATTGACCTTTCGAGGAAAACATTTTCCAGGATCCGTTTGAACTATATATGGGCTCTGGGTTACAATCTTCTCGGTATCCCAATCGCAGCGGGAGTCCTATTCCCATCTACTCGGTTTCGGTTGCCGCCATGGATTGCAGGAGCAGCAATGGCAGCCTCTTCAGTTAGTGTTGTTTGCAGTTCTCTCTTGCTCAAGTATTACAAACGACCAAAGAAACTAGATTCCCTTGAGATTCAAGGCATTAGAGTAGAATGA 2946 43.79 MATKFLSLACIRTQTSRDLTPRPRYPSMPKYPAGVSLQETSFPGTDTTAFFSVTGMTCSACAGSVEKAIKRLPGIREAVVDVLNAKARVQFYPSFVHVDQICEAINDAGFQAAVIEDDMIERCRIRVIGMTCTSCSTTLESTLQAIRGVQNAQVALATEEAEVCYDPRILSYNQLLQAVEDSGFEALLISTEEDMSKIQLKVDGVRTENSMRMIGHSLEALPGIQGIDIDPVLRKLSLSYKPDVTGPRSMIEVIESTGSGRFRASIFPEGQGREAYKKEEIKQYYRSFLWSLIFTIPIFLTSMVFMYIPGIKDGLDTKIVNMMGVGELLRWVLSTPVQFIIGRRFYTGSYKALRQGSANMDVLIALGTNAAYFYSVYLVLRSATSSDFMATDFFETSSMLISFILLGKYLEVLAKGKTSEAIAKLMKLVPETATLLTLDNDGNVLREEEIDSRLIQKNDVIKVIPGAKVASDGVVTWGQSHVNESMITGESKPVAKRMGDMVIGGTLNENGVLHVKATRVGSESALSQIVRLVESAQMAKAPVQKIADRVSKYFVPMVIVFSFTTWLVWFLTGKYGGYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATKGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVNTKLLKNMALKEFYELVAATEVNSEHPLAKAIVEYAKKFKEEDENQTWPEALDFISITGHGVKAIVQNKEIIAGNKSLMMDQNIFIPVEAEEILKEIEEMAQTGILVSIDRKLTGVLAISDPLKPSARDVISILKSMKVKSIVVTGDNWGTAKSIAKEVGIDDIIAEAKPEQKAEEVKKLQSLGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLLLKYYKRPKKLDSLEIQGIRVE 981
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 6734602 6739213 + evm.model.ptg000007l.913 HCH9g0913 551545
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0913 981 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 980 - -
HCH9g0913 981 SUPERFAMILY Calcium ATPase, transduction domain A 447 533 IPR008250 -
HCH9g0913 981 CDD HMA 51 113 IPR006121 GO:0046872(InterPro)
HCH9g0913 981 ProSiteProfiles Heavy-metal-associated domain profile. 121 187 IPR006121 GO:0046872(InterPro)
HCH9g0913 981 FunFam Probable copper-transporting ATPase HMA5 750 909 - -
HCH9g0913 981 SUPERFAMILY Calcium ATPase, transmembrane domain M 395 920 IPR023298 -
HCH9g0913 981 Gene3D - 734 783 IPR023299 GO:0000166(InterPro)
HCH9g0913 981 Gene3D - 654 733 IPR023299 GO:0000166(InterPro)
HCH9g0913 981 ProSitePatterns Heavy-metal-associated domain. 53 82 IPR017969 GO:0046872(InterPro)
HCH9g0913 981 FunFam ATPase copper transporting beta 119 194 - -
HCH9g0913 981 Pfam haloacid dehalogenase-like hydrolase 644 866 - -
HCH9g0913 981 ProSitePatterns Heavy-metal-associated domain. 127 156 IPR017969 GO:0046872(InterPro)
HCH9g0913 981 PRINTS Copper-transporting ATPase 1 signature 103 123 - -
HCH9g0913 981 PRINTS Copper-transporting ATPase 1 signature 48 73 - -
HCH9g0913 981 PRINTS Copper-transporting ATPase 1 signature 145 166 - -
HCH9g0913 981 PRINTS Copper-transporting ATPase 1 signature 74 97 - -
HCH9g0913 981 SUPERFAMILY HAD-like 646 958 IPR036412 -
HCH9g0913 981 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872(InterPro)
HCH9g0913 981 CDD P-type_ATPase_Cu-like 286 948 - -
HCH9g0913 981 NCBIfam HAD-IC family P-type ATPase 400 934 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH9g0913 981 Gene3D - 415 537 - -
HCH9g0913 981 FunFam Copper-transporting ATPase HMA5 46 117 - -
HCH9g0913 981 NCBIfam heavy metal translocating P-type ATPase 360 961 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
HCH9g0913 981 PRINTS P-type cation-transporting ATPase superfamily signature 483 497 - -
HCH9g0913 981 PRINTS P-type cation-transporting ATPase superfamily signature 799 809 - -
HCH9g0913 981 PRINTS P-type cation-transporting ATPase superfamily signature 875 887 - -
HCH9g0913 981 PRINTS P-type cation-transporting ATPase superfamily signature 777 788 - -
HCH9g0913 981 PRINTS P-type cation-transporting ATPase superfamily signature 852 871 - -
HCH9g0913 981 PRINTS P-type cation-transporting ATPase superfamily signature 647 661 - -
HCH9g0913 981 SFLD p-type atpase 629 904 IPR044492 -
HCH9g0913 981 NCBIfam copper ion binding protein 51 112 IPR006122 GO:0005507(InterPro)
HCH9g0913 981 FunFam Copper-transporting ATPase 1, putative 415 537 - -
HCH9g0913 981 PRINTS Copper-transporting ATPase signature 556 570 - -
HCH9g0913 981 PRINTS Copper-transporting ATPase signature 925 939 - -
HCH9g0913 981 PRINTS Copper-transporting ATPase signature 345 364 - -
HCH9g0913 981 PRINTS Copper-transporting ATPase signature 417 435 - -
HCH9g0913 981 PRINTS Copper-transporting ATPase signature 829 846 - -
HCH9g0913 981 PRINTS Copper-transporting ATPase signature 397 416 - -
HCH9g0913 981 SUPERFAMILY HMA, heavy metal-associated domain 46 117 IPR036163 GO:0046872(InterPro)
HCH9g0913 981 ProSitePatterns E1-E2 ATPases phosphorylation site. 649 655 IPR018303 -
HCH9g0913 981 Gene3D - 193 266 - -
HCH9g0913 981 SUPERFAMILY HMA, heavy metal-associated domain 192 260 IPR036163 GO:0046872(InterPro)
HCH9g0913 981 ProSiteProfiles Heavy-metal-associated domain profile. 196 262 IPR006121 GO:0046872(InterPro)
HCH9g0913 981 SFLD Haloacid Dehalogenase 629 904 - -
HCH9g0913 981 Gene3D - 44 115 - -
HCH9g0913 981 Pfam Heavy-metal-associated domain 125 185 IPR006121 GO:0046872(InterPro)
HCH9g0913 981 Pfam Heavy-metal-associated domain 51 110 IPR006121 GO:0046872(InterPro)
HCH9g0913 981 Pfam E1-E2 ATPase 428 626 - -
HCH9g0913 981 CDD HMA 125 186 IPR006121 GO:0046872(InterPro)
HCH9g0913 981 SUPERFAMILY HMA, heavy metal-associated domain 122 192 IPR036163 GO:0046872(InterPro)
HCH9g0913 981 Gene3D - 614 909 IPR023214 -
HCH9g0913 981 Gene3D - 120 192 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1171 HCH-Chr14:38516124 HCH9g0913 HCH-Chr9:6734602 1.90E-246 dispersed
HCH2g1385 HCH-Chr2:55631797 HCH9g0913 HCH-Chr9:6734602 2.60E-271 dispersed
HCH5g0502 HCH-Chr5:3416009 HCH9g0913 HCH-Chr9:6734602 0.00E+00 dispersed
HCH9g0913 HCH-Chr9:6734602 HCH8g1049 HCH-Chr8:46443646 8.60E-63 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0913 K17686 - csv:101218801 1694.09