Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0927 ATGTTGTGGGTCGACAAATATCGTCCCAAAACCCTAGATCAGATCACAGTCCATCAAGATGTAGCTCTTAATCTCAAGAAATTGGTTACCGAACAAGACTGCCCTCATTTGCTCTTCTATGGTCCTTCCGGTTCCGGCAAGAAAACCCTAATCATGGCCCTTATCCGACAGATGTTCGGAGCCAGTGCCGAGAAAGTGAAGGTGGAGAATAAGACATGGAAAGTTGATGCTGGAACTAGAACTATTGATATAGAGTTGACCACATTATCGAGTACCAACCACGTGGAGCTCAGTCCCAGTGATGCAGGTTTCCAGGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCTAAAAACAGACCAATTGACTCCAAAGGAAAGAGAGGATATAAAGTATTGGTTCTAAATGACGTTGACAAACTATCAAGAGAAGCCCAACACTCTCTCAGAAGAACAATGGAGAAATACAGCTCGTATTGCAGGTTGATACTTTGCTGCAATAGTTCATCAAGAGTAACTGAAGCAATCCGTTCTCGCTGCCTAAATGTTCGGATAAATGCACCAACAGAAGAGCAGATTGTCAAGGTATTAGAGTTCATTGGGAAGAAAGAAGGGCTTCAGCTTCCATCTGGATTTGCTTCTCGTATTGCAGAAAAATCAAACCGAAGTTTGAGGAGAGCTGTATTATCATTTGAAACTTGCCGTGTTCAACAGTATCCTTTTGCTAGTAACCAGGCCATACCACCAATGGATTGGGAGGAATATATTTGTGAGATAGCATCTGACATAATGAAGGAACAGAGCCCTAAAAGACTTTTTCAGGTTCGTGGAAAGTTGTATGAGCTACTTGTTAATTGTATTCCACCAGAGATTATATTGAAGAGGCTGCTTTATGAACTACTTAAGAAATTGGATGCTGAATTAAAGCACGAGGTCTGCCATTGGGCTGCATATTATGAACATAGGATGCGCCTTGGTCAGAAAGCCATCTTTCATATTGAAGCTTTTGTGGCCAAGTTCATGAGCATCTACAAAACTTTTCTCATTTCAACGTTTGGATAA 1065 41.03 MLWVDKYRPKTLDQITVHQDVALNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALIRQMFGASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELSPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGYKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINAPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAVLSFETCRVQQYPFASNQAIPPMDWEEYICEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6824529 6834146 - evm.model.ptg000007l.927 HCH9g0927 551559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0927 354 Pfam Replication factor C subunit 3, C-terminal domain 253 342 - -
HCH9g0927 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
HCH9g0927 354 FunFam Replication factor C subunit 3 252 345 - -
HCH9g0927 354 SMART AAA_5 33 192 IPR003593 GO:0016887(InterPro)
HCH9g0927 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 238 IPR027417 -
HCH9g0927 354 Gene3D - 190 248 - -
HCH9g0927 354 Pfam RCF1/5-like, AAA+ ATPase lid domain 196 236 - -
HCH9g0927 354 CDD AAA 35 189 - -
HCH9g0927 354 FunFam replication factor C subunit 3 190 248 - -
HCH9g0927 354 Pfam DNA polymerase III, delta subunit 23 188 - -
HCH9g0927 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 346 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
HCH9g0927 354 Gene3D - 252 345 - -
HCH9g0927 354 FunFam Replication factor C subunit 5 1 189 - -
HCH9g0927 354 Gene3D - 1 189 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0579 HCH-Chr14:34626844 HCH9g0927 HCH-Chr9:6824529 6.30E-63 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0927 K10756 - csv:101221072 659.062