Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0948 ATGGGCTTCTCACAAACTTTGGATCCTCAAATTCTTCTGGGTCTAGCTGTTGCTTTTTTTTCCCTTGTTGCTGGTGCTGTTTTCTTCTCATCCTCATCCAAAAAAACCAAATCCAAAGGTTGTTTAGATCCAGAAAACTTCAAGAAGTTTAAACTAATCAAGCATAAGCAGCTGAGCCACAATGTGGCGAAGTTTACATTCGCACTCCCGACACCTACTTCAGTTCTGGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATAGCAATGGTGAAGAGGTTTTGAAACCTTACACCCCTTGCACATTGGATTCTGATGTCGGATATTTTGAGTTGGTCATAAAGATGTATCCCCAAGGAAGGATGTCACATCATTTCCGGGAGATGCGTGTTGGTGATTTTCTTGCTGTAAAGGGCCCCAAGGGGCGTTTCAAGTATCAACCTGGCCAAGTTAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACTCCCATGTTTCAAGTTGCTCGAGCAATACTAGAAAATCCAAATGACAAGACAACGGTACACCTCATTTATGCCAATGTCACATCTGAGGATATTCTTTTAAAGGAGGAGTTGGATCTTCTTGCCACCAGGTACCCTGATAGCTTCAAGATTTATTATGTCTTAAACCAGCCTCCTGAAGTGTGGGATGGCGGCGTCGGATTCGTATCGAAGGAGATGATTCAAACTCACTGCCCTGCACCAGCTTCTGATATCCAGATTCTGAGATGTGGGCCACCACCTATGAACAAGGCCATGGCTGCTCATCTTGAAGCTCTTGAATATGCACCTGAGATGCTCTTCCAGTTCTGA 846 44.8 MGFSQTLDPQILLGLAVAFFSLVAGAVFFSSSSKKTKSKGCLDPENFKKFKLIKHKQLSHNVAKFTFALPTPTSVLGLPIGQHISCRGKDSNGEEVLKPYTPCTLDSDVGYFELVIKMYPQGRMSHHFREMRVGDFLAVKGPKGRFKYQPGQVRAFGMLAGGSGITPMFQVARAILENPNDKTTVHLIYANVTSEDILLKEELDLLATRYPDSFKIYYVLNQPPEVWDGGVGFVSKEMIQTHCPAPASDIQILRCGPPPMNKAMAAHLEALEYAPEMLFQF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7043145 7049470 - evm.model.ptg000007l.948 HCH9g0948 551580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0948 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491(InterPro)
HCH9g0948 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 22 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
HCH9g0948 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
HCH9g0948 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
HCH9g0948 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
HCH9g0948 281 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 157 176 IPR001709 GO:0016491(InterPro)
HCH9g0948 281 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 195 206 IPR001709 GO:0016491(InterPro)
HCH9g0948 281 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 251 259 IPR001709 GO:0016491(InterPro)
HCH9g0948 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
HCH9g0948 281 Gene3D - 140 281 IPR039261 -
HCH9g0948 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
HCH9g0948 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
HCH9g0948 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
HCH9g0948 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
HCH9g0948 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
HCH9g0948 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
HCH9g0948 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
HCH9g0948 281 Gene3D Translation factors 40 139 - -
HCH9g0948 281 CDD cyt_b5_reduct_like 50 281 - -
HCH9g0948 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0948 K00326 - - csv:101212569 492.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0426 HCH-Chr10:3405620 HCH9g0948 HCH-Chr9:7043145 4.30E-51 dispersed
HCH11g0670 HCH-Chr11:31079199 HCH9g0948 HCH-Chr9:7043145 1.60E-134 dispersed
HCH9g0948 HCH-Chr9:7043145 HCH12g0785 HCH-Chr12:5069167 1.10E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH5g0902 . 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-57 218.4
HCH7g1423 . 1 133 NADPH P450 reductases AT5G53560 66.9 7.5e-50 193.4
HCH5g0187 . 1 134 NADPH P450 reductases AT5G53560 61.2 1.1e-45 179.5
HCH7g1737 . 1 136 NADPH P450 reductases AT5G53560 57.4 5.4e-40 160.6
HCH7g1423 . 1 133 NADPH P450 reductases AT5G48810 66.7 6.0e-50 193.7
HCH5g0187 . 1 134 NADPH P450 reductases AT5G48810 61.8 3.1e-46 181.4
HCH5g0902 . 1 134 NADPH P450 reductases AT5G48810 61.0 4.9e-44 174.1
HCH7g1737 . 1 134 NADPH P450 reductases AT5G48810 54.5 8.1e-39 156.8
HCH7g1423 . 22 133 NADPH P450 reductases AT2G32720 86.6 1.0e-51 199.5
HCH5g0187 . 22 133 NADPH P450 reductases AT2G32720 67.9 5.4e-40 160.6
HCH5g0902 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.3e-38 155.2
HCH10g0497 . 2 115 NADPH P450 reductases AT1G60660 65.0 5.4e-39 157.1
HCH4g0156 . 1 125 NADPH P450 reductases AT1G26340 56.0 4.3e-37 151.0
HCH9g0948 . 3 281 NADPH P450 reductases AT5G17770 82.8 9.5e-132 466.5
HCH11g0670 . 2 280 NADPH P450 reductases AT5G17770 80.0 6.4e-128 453.8
HCH5g0902 . 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-57 218.4
HCH7g1423 . 1 133 NADPH P450 reductases AT5G53560 66.9 7.5e-50 193.4
HCH5g0187 . 1 134 NADPH P450 reductases AT5G53560 61.2 1.1e-45 179.5
HCH7g1737 . 1 136 NADPH P450 reductases AT5G53560 57.4 5.4e-40 160.6
HCH7g1423 . 1 133 NADPH P450 reductases AT5G48810 66.7 6.0e-50 193.7
HCH5g0187 . 1 134 NADPH P450 reductases AT5G48810 61.8 3.1e-46 181.4
HCH5g0902 . 1 134 NADPH P450 reductases AT5G48810 61.0 4.9e-44 174.1
HCH7g1737 . 1 134 NADPH P450 reductases AT5G48810 54.5 8.1e-39 156.8
HCH7g1423 . 22 133 NADPH P450 reductases AT2G32720 86.6 1.0e-51 199.5
HCH5g0187 . 22 133 NADPH P450 reductases AT2G32720 67.9 5.4e-40 160.6
HCH5g0902 . 22 133 NADPH P450 reductases AT2G32720 63.4 2.3e-38 155.2
HCH10g0497 . 2 115 NADPH P450 reductases AT1G60660 65.0 5.4e-39 157.1
HCH4g0156 . 1 125 NADPH P450 reductases AT1G26340 56.0 4.3e-37 151.0
HCH9g0948 . 3 281 NADPH P450 reductases AT5G17770 82.8 9.5e-132 466.5
HCH11g0670 . 2 280 NADPH P450 reductases AT5G17770 80.0 6.4e-128 453.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86