Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0948 ATGGGCTTCTCACAAACTTTGGATCCTCAAATTCTTCTGGGTCTAGCTGTTGCTTTTTTTTCCCTTGTTGCTGGTGCTGTTTTCTTCTCATCCTCATCCAAAAAAACCAAATCCAAAGGTTGTTTAGATCCAGAAAACTTCAAGAAGTTTAAACTAATCAAGCATAAGCAGCTGAGCCACAATGTGGCGAAGTTTACATTCGCACTCCCGACACCTACTTCAGTTCTGGGTCTTCCCATTGGACAACATATAAGTTGCAGGGGCAAGGATAGCAATGGTGAAGAGGTTTTGAAACCTTACACCCCTTGCACATTGGATTCTGATGTCGGATATTTTGAGTTGGTCATAAAGATGTATCCCCAAGGAAGGATGTCACATCATTTCCGGGAGATGCGTGTTGGTGATTTTCTTGCTGTAAAGGGCCCCAAGGGGCGTTTCAAGTATCAACCTGGCCAAGTTAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACTCCCATGTTTCAAGTTGCTCGAGCAATACTAGAAAATCCAAATGACAAGACAACGGTACACCTCATTTATGCCAATGTCACATCTGAGGATATTCTTTTAAAGGAGGAGTTGGATCTTCTTGCCACCAGGTACCCTGATAGCTTCAAGATTTATTATGTCTTAAACCAGCCTCCTGAAGTGTGGGATGGCGGCGTCGGATTCGTATCGAAGGAGATGATTCAAACTCACTGCCCTGCACCAGCTTCTGATATCCAGATTCTGAGATGTGGGCCACCACCTATGAACAAGGCCATGGCTGCTCATCTTGAAGCTCTTGAATATGCACCTGAGATGCTCTTCCAGTTCTGA 846 44.8 MGFSQTLDPQILLGLAVAFFSLVAGAVFFSSSSKKTKSKGCLDPENFKKFKLIKHKQLSHNVAKFTFALPTPTSVLGLPIGQHISCRGKDSNGEEVLKPYTPCTLDSDVGYFELVIKMYPQGRMSHHFREMRVGDFLAVKGPKGRFKYQPGQVRAFGMLAGGSGITPMFQVARAILENPNDKTTVHLIYANVTSEDILLKEELDLLATRYPDSFKIYYVLNQPPEVWDGGVGFVSKEMIQTHCPAPASDIQILRCGPPPMNKAMAAHLEALEYAPEMLFQF 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7043145 7049470 - evm.model.ptg000007l.948 HCH9g0948 551580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0948 281 Pfam Oxidoreductase NAD-binding domain 158 264 IPR001433 GO:0016491(InterPro)
HCH9g0948 281 PANTHER NADH-CYTOCHROME B5 REDUCTASE 22 281 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
HCH9g0948 281 FunFam NADH-cytochrome b5 reductase 40 139 - -
HCH9g0948 281 FunFam NADH-cytochrome b5 reductase 139 281 - -
HCH9g0948 281 Pfam Oxidoreductase FAD-binding domain 50 148 IPR008333 -
HCH9g0948 281 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 157 176 IPR001709 GO:0016491(InterPro)
HCH9g0948 281 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 195 206 IPR001709 GO:0016491(InterPro)
HCH9g0948 281 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 251 259 IPR001709 GO:0016491(InterPro)
HCH9g0948 281 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 45 149 IPR017927 GO:0016491(InterPro)
HCH9g0948 281 Gene3D - 140 281 IPR039261 -
HCH9g0948 281 PRINTS Cytochrome B5 reductase signature 134 148 - -
HCH9g0948 281 PRINTS Cytochrome B5 reductase signature 251 259 - -
HCH9g0948 281 PRINTS Cytochrome B5 reductase signature 76 87 - -
HCH9g0948 281 PRINTS Cytochrome B5 reductase signature 98 105 - -
HCH9g0948 281 PRINTS Cytochrome B5 reductase signature 157 176 - -
HCH9g0948 281 PRINTS Cytochrome B5 reductase signature 195 206 - -
HCH9g0948 281 SUPERFAMILY Riboflavin synthase domain-like 42 150 IPR017938 -
HCH9g0948 281 Gene3D Translation factors 40 139 - -
HCH9g0948 281 CDD cyt_b5_reduct_like 50 281 - -
HCH9g0948 281 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 137 278 IPR039261 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0426 HCH-Chr10:3405620 HCH9g0948 HCH-Chr9:7043145 4.30E-51 dispersed
HCH11g0670 HCH-Chr11:31079199 HCH9g0948 HCH-Chr9:7043145 1.60E-134 dispersed
HCH9g0948 HCH-Chr9:7043145 HCH12g0785 HCH-Chr12:5069167 1.10E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0948 K00326 - csv:101212569 492.271