Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0976 ATGAGGGAAGAACAGTCTAATTGGTTTTCTAGATGGGAAGAAGAGCTTCCTCCTCCAGAGGATCTTATGCCACTTTCCCAAACCCTAATTACCCCAGATCTAGCTCTGGCTTTTGATATTCGAAATCCTAGTAATAGTAGCCCACCACTCACCTGCCCCTCTCCCCCCCTTTCGAATCCGTTACCGGGCTCTGGTGGTAACGGTATCGCTCAACCCGATTTCGGTGATTCGGCCGATTTGGGCTCTGGGGCTGCTGGCGATGAACCGGCCCGCACACTTAAGCGACCGCGTCTCGTATGGACGCCACAGCTCCACAAGCGATTTGTGGATGCTGTTGCTCATTTGGGGATTAAGAATGCTGTGCCTAAGACTATAATGCAGCTTATGAGTGTGGATGGATTGACAAGGGAAAATGTAGCTAGTCATTTGCAGAAGTACCGCCTTTATTTGAAGCGGATGCAGGGGTTGTCCGGTGGCGGTGGTGGCGGTGGAGGTGGCTTAGTTGCGTCTTCTGATCCAGCCACTGATCATTTATTCGCTAGCTCCCCCGTGCCGCCTCATTTGCTGCATTCAGCTCGTGCCAGCTCAGACCATTTCTTGCCTTTTGTGCCAATGGCTACTTTGCAGCACCACCACCATCAGCAGCAGCAGATGGCGGCAGCGGCTGCTGTGGCCGTCGCACATCCACAGCTGCAGCCTCAGTATCATAGGCAGGTGGGGCATTTTGGGTCACCTCCAAATGGGCAATTTGATCATCCATTTTTAGGCAGGCAATCACATCCTATTCATAGGATAGGAGCACCAGTGCATAACTCTGTACCAAACTATATTGAGGATCTGGAATCAGCCAATGCAACTGGAGGAAGAAAAGTTCTCACCTTATTTCCAACTGGAGATGACTGA 903 51.16 MREEQSNWFSRWEEELPPPEDLMPLSQTLITPDLALAFDIRNPSNSSPPLTCPSPPLSNPLPGSGGNGIAQPDFGDSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGGGGGGGLVASSDPATDHLFASSPVPPHLLHSARASSDHFLPFVPMATLQHHHHQQQQMAAAAAVAVAHPQLQPQYHRQVGHFGSPPNGQFDHPFLGRQSHPIHRIGAPVHNSVPNYIEDLESANATGGRKVLTLFPTGDD 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7294860 7295762 - evm.model.ptg000007l.976 HCH9g0976 551608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0976 300 FunFam Two-component response regulator 91 154 - -
HCH9g0976 300 Gene3D - 92 154 - -
HCH9g0976 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 151 IPR017930 -
HCH9g0976 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677(InterPro)
HCH9g0976 300 MobiDBLite consensus disorder prediction 40 89 - -
HCH9g0976 300 Pfam Myb-like DNA-binding domain 98 147 IPR001005 -
HCH9g0976 300 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 256 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g0976 300 MobiDBLite consensus disorder prediction 1 18 - -
HCH9g0976 300 SUPERFAMILY Homeodomain-like 92 152 IPR009057 -
HCH9g0976 300 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1065 HCH-Chr2:53664572 HCH9g0976 HCH-Chr9:7294860 4.60E-28 dispersed
HCH3g1389 HCH-Chr3:51872592 HCH9g0976 HCH-Chr9:7294860 2.30E-33 dispersed
HCH9g0976 HCH-Chr9:7294860 HCH9g1278 HCH-Chr9:38492933 2.60E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34180 PF00249 Myb_DNA-binding 2.20E-08 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0976 - - - 0.0