Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0977 ATGGCTTCCAGACCAGTTGTTCCACAGCAAATCAGAGGTGAGGCGGATATCGGTGTAGGAAAGCAGCAAAAGGGCGGTGCAGCCGATGGGCGGAACCGCCGAGCACTGGGCGATATTGGGAATCTAGTAACTGTTCGAGGAATTGAGACAAAGGCAAATCGCCCAATTACCAGGAGCTTTTGTGCACAATTGCTTGCTAATGCTCAAGCAGCTGCAAAAGCTGAAAACAACAAGAAACAAGTGCCGGTCAAAGTGGAGGGGGCTCCCATACTTGGTGTCGTTGCAGCTGCTAAGAAAGCAGGAGCTCCTAAACCAATCCAGAAGAAAGTTGTTGTTAAACCCAAGTCTAAGGTTATCGAGATCAGCCCGGATACCGCGGAAGAAGATATCGGCAAGGAAGACAAATGTGCAATCAAGAAAAAGGAGGGAGAATGTGTCTTGAAGAAGAAAACACAGACTCTTTCTTCAGTCATGACCGCTAGAAGCAAGGCTGCCTGTGGTATAGCCAACAAACCCAAAGAGCAGGTTGTTGATATAGATGCTGCAGATGCCGGCAATGAGTTAGCAGCAGTTGATTATATTGAAGACATTTACAAATTCTATAAGGAAGTTGAGAATGAGAGCAGACCTCATGATTATATGGATTCACAACCTGAGATAAATGTTTCAATGAGGGCCATTTTGGTGGATTGGCTGGTTGATGTCCACAATAAGTTTGAACTTTCGCCCGAAACTTTTTACCTCACCATCAACATAATCGACCGATTCCTCGCAACCAAGGTAGTTGCAAGAAGGGAATTACAATTGGTTGGCGTCGGTGCCTTACTTATGGCCTCCAAATATGAAGAAATCTGGGCTCCTGAGGTACAAGACTTTGTGTGTTTGTCAGATAATGCTTTCACACATGAGCAGATACTTGTTATGGAGAAAAGGATTCTTGGAAAGCTGGAATGGACATTGACTGTGCCGACACCATACGTTTTCCTCGTTCGATTTATCAAGGCGTCAAACGACAACGATCTTGAGATGGAAAATATGGTGTTTTTTCTAGCAGAACTTGGTATGATGCATTACAACACCATAATACAATATAGCCCATCAATGATTGCCGCCTCAGCAGTCTATGCCGCTCGATGCACGCTTAAGAAAAGTCCTGCTTGGAATGACACTCTCAAGCTGCACACTGGTTTCTCAGAGCCTCAGATAATTAATTGTGCACAACTTCTGGTGAACTTCCATGGGCTGGCTAGCAAAAGTAAGCTTCAGGTAATAAACAAAAAATACTCGCGTTCCGAACGAGGAGCGGTGGCGCTGCTTCCTCCGGCCAAAGCTCTGTTACTTGGTGCAAATTGA 1353 45.16 MASRPVVPQQIRGEADIGVGKQQKGGAADGRNRRALGDIGNLVTVRGIETKANRPITRSFCAQLLANAQAAAKAENNKKQVPVKVEGAPILGVVAAAKKAGAPKPIQKKVVVKPKSKVIEISPDTAEEDIGKEDKCAIKKKEGECVLKKKTQTLSSVMTARSKAACGIANKPKEQVVDIDAADAGNELAAVDYIEDIYKFYKEVENESRPHDYMDSQPEINVSMRAILVDWLVDVHNKFELSPETFYLTINIIDRFLATKVVARRELQLVGVGALLMASKYEEIWAPEVQDFVCLSDNAFTHEQILVMEKRILGKLEWTLTVPTPYVFLVRFIKASNDNDLEMENMVFFLAELGMMHYNTIIQYSPSMIAASAVYAARCTLKKSPAWNDTLKLHTGFSEPQIINCAQLLVNFHGLASKSKLQVINKKYSRSERGAVALLPPAKALLLGAN 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7299250 7301588 - evm.model.ptg000007l.977 HCH9g0977 551609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0977 450 SUPERFAMILY Cyclin-like 322 443 IPR036915 -
HCH9g0977 450 CDD CYCLIN_AtCycB-like_rpt1 173 318 - -
HCH9g0977 450 SUPERFAMILY Cyclin-like 186 320 IPR036915 -
HCH9g0977 450 ProSitePatterns Cyclins signature. 225 256 IPR048258 -
HCH9g0977 450 SMART Cyclin_C_2 323 442 IPR004367 -
HCH9g0977 450 FunFam G2/mitotic-specific cyclin-1 311 437 - -
HCH9g0977 450 Pfam Cyclin, C-terminal domain 323 441 IPR004367 -
HCH9g0977 450 Gene3D - 196 437 - -
HCH9g0977 450 MobiDBLite consensus disorder prediction 1 32 - -
HCH9g0977 450 PANTHER CYCLINS 171 429 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH9g0977 450 SMART cyclin_7 327 411 IPR013763 -
HCH9g0977 450 SMART cyclin_7 230 314 IPR013763 -
HCH9g0977 450 PIRSF Cyclin_A_B_D_E 1 450 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
HCH9g0977 450 Pfam Cyclin, N-terminal domain 196 320 IPR006671 -
HCH9g0977 450 Gene3D - 210 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0711 HCH-Chr14:35539224 HCH9g0977 HCH-Chr9:7299250 6.50E-63 dispersed
HCH2g1311 HCH-Chr2:55191893 HCH9g0977 HCH-Chr9:7299250 7.20E-112 dispersed
HCH7g0021 HCH-Chr7:173000 HCH9g0977 HCH-Chr9:7299250 9.70E-55 dispersed
HCH7g0708 HCH-Chr7:8615998 HCH9g0977 HCH-Chr9:7299250 9.20E-36 dispersed
HCH9g0977 HCH-Chr9:7299250 HCH9g1126 HCH-Chr9:14309924 9.50E-33 dispersed
HCH9g0977 HCH-Chr9:7299250 HCH13g1311 HCH-Chr13:41075728 2.00E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0977 K21777 - csv:101217210 649.818