Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g0991 ATGCACTCTCCAAACTCAAATCTCCATCCTTTCCTCGCCGGAGACTCCGGTGGTTTCCGTTCGTCACAAAGCTTTTCATGGCGTCACCATTCGGAGGAAAGCGAGGAGCCACCGCCTTCCGCCGTATCCCATGATCGAGCTCTGGCTGCTCTGAAGAATCATAAGGAGGCAGAGAAGAGGAGGAGAGAGAGAATTAACTCGCATCTCAACAAGCTTCGAACAATTCTTCTTTGTAATTCTAAGACCGACAAAGCTTCCATACTAACTAAAGTAGTACAACACGTGCGAGAGCTGAAGAACCAGCAAACCTCCATTATTACGAAGCTTCAACTCGACGCCATCCCGTCGGAGACCGACGAAATAAATGTATTTCCCGGCGACTATTCCGATGACGGGAGATTGATTTTCAAAGCCTCGTTATGCTGCGAGGATCGGAGCGATCTACTGCCGGAGCTAATCGGAATTCTGAATTCTCACCATTTGAAAACAGTGAGAGCTGAAATAGCTACGCTTGGAGGAAGAATCCGTAACGTTCTCGTAGTTCAAACGGAGCATGGTCAGAGTATTGAGTCCATTCATTTCTTGCGTAAAGCTTTAAAATCTTTGCTCGATCGCGGCGGCTGCGGCGGTGATCGGATGAAAAGGCGGCGGGTGACGTTTGACCGTACGGCCTAG 675 49.04 MHSPNSNLHPFLAGDSGGFRSSQSFSWRHHSEESEEPPPSAVSHDRALAALKNHKEAEKRRRERINSHLNKLRTILLCNSKTDKASILTKVVQHVRELKNQQTSIITKLQLDAIPSETDEINVFPGDYSDDGRLIFKASLCCEDRSDLLPELIGILNSHHLKTVRAEIATLGGRIRNVLVVQTEHGQSIESIHFLRKALKSLLDRGGCGGDRMKRRRVTFDRTA 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7566985 7568845 + evm.model.ptg000007l.991 HCH9g0991 551623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g0991 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 108 IPR036638 GO:0046983(InterPro)
HCH9g0991 224 MobiDBLite consensus disorder prediction 1 43 - -
HCH9g0991 224 Gene3D - 45 108 IPR036638 GO:0046983(InterPro)
HCH9g0991 224 MobiDBLite consensus disorder prediction 26 40 - -
HCH9g0991 224 Pfam Helix-loop-helix DNA-binding domain 53 99 IPR011598 GO:0046983(InterPro)
HCH9g0991 224 SMART finulus 55 104 IPR011598 GO:0046983(InterPro)
HCH9g0991 224 SUPERFAMILY ACT-like 139 205 IPR045865 -
HCH9g0991 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983(InterPro)
HCH9g0991 224 CDD bHLH_AtAIG1_like 45 124 - -
HCH9g0991 224 PANTHER TRANSCRIPTION FACTOR BHLH30 31 220 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0991 HCH-Chr9:7566985 HCH9g1299 HCH-Chr9:40808004 1.70E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34182 PF00010 HLH 3.90E-12 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g0991 - - - 0.0