Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g0991 | ATGCACTCTCCAAACTCAAATCTCCATCCTTTCCTCGCCGGAGACTCCGGTGGTTTCCGTTCGTCACAAAGCTTTTCATGGCGTCACCATTCGGAGGAAAGCGAGGAGCCACCGCCTTCCGCCGTATCCCATGATCGAGCTCTGGCTGCTCTGAAGAATCATAAGGAGGCAGAGAAGAGGAGGAGAGAGAGAATTAACTCGCATCTCAACAAGCTTCGAACAATTCTTCTTTGTAATTCTAAGACCGACAAAGCTTCCATACTAACTAAAGTAGTACAACACGTGCGAGAGCTGAAGAACCAGCAAACCTCCATTATTACGAAGCTTCAACTCGACGCCATCCCGTCGGAGACCGACGAAATAAATGTATTTCCCGGCGACTATTCCGATGACGGGAGATTGATTTTCAAAGCCTCGTTATGCTGCGAGGATCGGAGCGATCTACTGCCGGAGCTAATCGGAATTCTGAATTCTCACCATTTGAAAACAGTGAGAGCTGAAATAGCTACGCTTGGAGGAAGAATCCGTAACGTTCTCGTAGTTCAAACGGAGCATGGTCAGAGTATTGAGTCCATTCATTTCTTGCGTAAAGCTTTAAAATCTTTGCTCGATCGCGGCGGCTGCGGCGGTGATCGGATGAAAAGGCGGCGGGTGACGTTTGACCGTACGGCCTAG | 675 | 49.04 | MHSPNSNLHPFLAGDSGGFRSSQSFSWRHHSEESEEPPPSAVSHDRALAALKNHKEAEKRRRERINSHLNKLRTILLCNSKTDKASILTKVVQHVRELKNQQTSIITKLQLDAIPSETDEINVFPGDYSDDGRLIFKASLCCEDRSDLLPELIGILNSHHLKTVRAEIATLGGRIRNVLVVQTEHGQSIESIHFLRKALKSLLDRGGCGGDRMKRRRVTFDRTA | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 7566985 | 7568845 | + | evm.model.ptg000007l.991 | HCH9g0991 | 551623 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g0991 | 224 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 53 | 108 | IPR036638 | GO:0046983(InterPro) | |
HCH9g0991 | 224 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
HCH9g0991 | 224 | Gene3D | - | 45 | 108 | IPR036638 | GO:0046983(InterPro) | |
HCH9g0991 | 224 | MobiDBLite | consensus disorder prediction | 26 | 40 | - | - | |
HCH9g0991 | 224 | Pfam | Helix-loop-helix DNA-binding domain | 53 | 99 | IPR011598 | GO:0046983(InterPro) | |
HCH9g0991 | 224 | SMART | finulus | 55 | 104 | IPR011598 | GO:0046983(InterPro) | |
HCH9g0991 | 224 | SUPERFAMILY | ACT-like | 139 | 205 | IPR045865 | - | |
HCH9g0991 | 224 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 49 | 98 | IPR011598 | GO:0046983(InterPro) | |
HCH9g0991 | 224 | CDD | bHLH_AtAIG1_like | 45 | 124 | - | - | |
HCH9g0991 | 224 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 31 | 220 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH9g0991 | HCH-Chr9:7566985 | HCH9g1299 | HCH-Chr9:40808004 | 1.70E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34182 | PF00010 | HLH | 3.90E-12 | No_clan | HCH | TF |
Pathway information
