Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1007 ATGGGATCTTCAGTTGCTGCAATGGGCATGGTTTCTGAATCTAAATTTCATGTTTTGGCTGTTGATGATAGCCTTATTGATAGAAAACTCATTGAGATGCTTCTTAAAACCTCTTCTTATCAAGTTACCACTGTTGATTCTGGTAGTAAAGCTTTGGAGTTTTTGGGTTTGAGAGGAGATGATCCAAGCAATTCTACTCCTTCTGTTTCCTCTATTAATCATCATCAGGAAGTAGCTGTGAATCTTGTTATAACAGATTACTGTATGCCTGGGATGACTGGCTATGATTTATTGAAAAAAATCAAGGGATCTAAGGCTTTGAGAAACATACCGGTCGTGATTATGTCGTCTGAGAATGTCCCTTCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAAGAATTTTTTCTGAAACCTGTGAAGATATCAGATGTCACCAGACTCAGACCCCATATATTGAAAACCAAAGTCAGAGATGGAAAAGAAGAGAAAACTGAAGAAGAGGATGATAAACCTGTTTCAGGAAGCCAATCCCTATCAATAGAACAACAACAACAACCGGAACAGGAACCCGAACAATTGCGATTACTGCCGCCGCTACCAGCACCGCTGCACGATGGAGATGAATTGCAATTACTGCCACCATTGCCAACACCACCACAACAATCCAACAATAACAAGAGGAAGGCAATGGAAGAGGGACTCTCACCAGATAGAACAAGACCTAGATACAATGGTATTACCACTATGGTGTAG 756 40.48 MGSSVAAMGMVSESKFHVLAVDDSLIDRKLIEMLLKTSSYQVTTVDSGSKALEFLGLRGDDPSNSTPSVSSINHHQEVAVNLVITDYCMPGMTGYDLLKKIKGSKALRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVKISDVTRLRPHILKTKVRDGKEEKTEEEDDKPVSGSQSLSIEQQQQPEQEPEQLRLLPPLPAPLHDGDELQLLPPLPTPPQQSNNNKRKAMEEGLSPDRTRPRYNGITTMV 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8043156 8044650 + evm.model.ptg000007l.1007 HCH9g1007 551639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1007 251 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 209 IPR045279 GO:0009736(InterPro)
HCH9g1007 251 MobiDBLite consensus disorder prediction 158 173 - -
HCH9g1007 251 SUPERFAMILY CheY-like 14 148 IPR011006 -
HCH9g1007 251 Gene3D - 17 233 - -
HCH9g1007 251 CDD REC_typeA_ARR 18 148 - -
HCH9g1007 251 MobiDBLite consensus disorder prediction 174 191 - -
HCH9g1007 251 SMART REC_2 16 149 IPR001789 GO:0000160(InterPro)
HCH9g1007 251 ProSiteProfiles Response regulatory domain profile. 17 153 IPR001789 GO:0000160(InterPro)
HCH9g1007 251 MobiDBLite consensus disorder prediction 158 251 - -
HCH9g1007 251 Pfam Response regulator receiver domain 72 145 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0816 HCH-Chr12:5338825 HCH9g1007 HCH-Chr9:8043156 6.60E-42 dispersed
HCH13g0137 HCH-Chr13:879166 HCH9g1007 HCH-Chr9:8043156 8.90E-48 dispersed
HCH1g0268 HCH-Chr1:43641933 HCH9g1007 HCH-Chr9:8043156 2.30E-41 dispersed
HCH1g0631 HCH-Chr1:55319399 HCH9g1007 HCH-Chr9:8043156 1.20E-55 dispersed
HCH1g0993 HCH-Chr1:58024338 HCH9g1007 HCH-Chr9:8043156 3.80E-41 dispersed
HCH8g1351 HCH-Chr8:48364891 HCH9g1007 HCH-Chr9:8043156 5.00E-41 dispersed
HCH9g1007 HCH-Chr9:8043156 HCH10g1194 HCH-Chr10:42716281 1.20E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34184 PF00072 Response_reg 1.90E-18 CL0304 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1007 K14492 - csv:101220999 319.701