Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1036 ATGGCAGATTATGACCTAACTCCTAGGATCGCTCCAAATCTCGACCGTCACCTTGTCTTTCCTCTCCTTGAATTCCTTCAAGAAAGACAATTTTACCCCGATGAACAAATCCTCAAGGCTAAAATTGAGCTTCTCAACAAAACCAATATGGTCGATTACGCCATGGATATCCATAAATCCCTTTACCACACCGATGACGTTCCTCAAGATATGGTGGATAGAAGAGCGGAAGTCGTTGCGAGGTTGAAGGCTTTGGAGGAGTCAGCGGCTCCACTTGTGGCTTTTCTTCAGAATCCGGCTGCTGTTCAGGAATTGAGAGCTGATAAACAGTACAATCTTCAAATGCTTAATGAACGTTATCAGATTGGTCCAGATCAAATAGAAGCTCTGTATCAATATGCCAAATTTCAGTTTGAGTGTGGGAATTACTCCGGTGCTGCTGACTATCTGTATCAGTACAGGGCCTTATGCACTAACAGTGAGAGGAGTCTGAGTGCTCTTTGGGGAAAACTGGCAGCTGAGGTTTTGATGCAGAACTGGGATATTGCTCTTGAAGAGCTTAATCGTTTGAAAGAAATTATTGACTCAAAGAATTTCTCTTCACCTATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGTCTCTTCATCTTTTTCAATCATGATAATGGAAGAACACAGATTATTGACCTGTTTAATCAAGACAAATATTTAAATGCCATCCAAACCAATGCTCCCCATCTTTTACGCTATTTGGCCACTGCATTCATTGTTAACAAAAGGAGGAGACCACAATTCAAAGATTTTATAAAGGTTATTCAGCAAGAACAGTGCTCCTACAACGATCCCATTACAGAGTTTTTGACTTGTGTGTATGTCAATTACGATTTTGATGGGGCACAAAAGAAGATGAGGGAGTGTGAAGAAGTTATATTGAACGACCCTTTCCTTGGAAAAAGGCTCGAAGAAGGCAACCTTTCTTCTGTTCCTTTGAGAGATGAGTTTCTGGAAAATGCTCGCCTTTTTATCTTTGAGACTTACTGCAGAATACATCAACGTATTGATTTGAGTGTCCTTGCTGAGAAGTTGAACTTGAATTACGAGGAGGCTGAGAGATGGATTGTTAATCTTGTACGGACTTCAAAGCTTGACGCCAATATTGACTCAAAGACGGGAACTATTATAATGGAACCGAATCATCCGAATGTGTATGAACAGCTGATAGATCATACCAAGGCATTGTCTGGGCGTACTTACAAGTTAGTCAGTCAACTTCTAGAGCATGCACAGGCTCAGACAACTCGATAA 1314 40.94 MADYDLTPRIAPNLDRHLVFPLLEFLQERQFYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTDDVPQDMVDRRAEVVARLKALEESAAPLVAFLQNPAAVQELRADKQYNLQMLNERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEVLMQNWDIALEELNRLKEIIDSKNFSSPMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQCSYNDPITEFLTCVYVNYDFDGAQKKMRECEEVILNDPFLGKRLEEGNLSSVPLRDEFLENARLFIFETYCRIHQRIDLSVLAEKLNLNYEEAERWIVNLVRTSKLDANIDSKTGTIIMEPNHPNVYEQLIDHTKALSGRTYKLVSQLLEHAQAQTTR 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8607262 8612397 - evm.model.ptg000007l.1036 HCH9g1036 551668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1036 437 FunFam Eukaryotic translation initiation factor 3 subunit E 228 433 - -
HCH9g1036 437 Gene3D - 134 433 - -
HCH9g1036 437 Pfam Eukaryotic translation initiation factor 3 subunit E, C-terminal 404 424 - -
HCH9g1036 437 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
HCH9g1036 437 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 429 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
HCH9g1036 437 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 332 416 IPR000717 -
HCH9g1036 437 PIRSF Transl_init_eIF3e 1 437 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
HCH9g1036 437 ProSiteProfiles PCI domain profile. 219 403 IPR000717 -
HCH9g1036 437 SUPERFAMILY TPR-like 120 193 IPR011990 GO:0005515(InterPro)
HCH9g1036 437 SUPERFAMILY Winged helix DNA-binding domain 333 403 IPR036390 -
HCH9g1036 437 SMART eIF3_N_2 5 137 IPR019010 -
HCH9g1036 437 Pfam PCI domain 306 399 IPR000717 -
HCH9g1036 437 CDD eIF3E 4 429 IPR016650 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
HCH9g1036 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 434 IPR016650 GO:0003743(InterPro)|GO:0005634(PANTHER)|GO:0005737(InterPro)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(PANTHER)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1036 K03250 - csv:101205199 849.736