Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1054 ATGTTGGAGGAGAAAGAAAACCAGGAAGGTGAAAGTTCAATAAAGATCAAGAGAAAAACAATGGGTAGAGGAAGAGTTGAGATCAAGAAGATTGAAAATATTAATAGCAGACAAGTTACTTTCTCTAAACGACGTAATGGGTTGATGAAAAAAGCTAAGGAATTGTCTGTTCTTTGTGATTCTGAGGTTGCCATTATCGTTTTTTCCAGCACTGGAAGGCTTTATGAATTTTCCAGCACCAATATGGAACATACTCTTTCAAGGTACAGAGGAAAGGGCGGGGACTTGGAGTTGGATTTTTCAAGAGAGATTGTAGAGCACACCATAGAGCAACCACCATCTGATGTAAAACCATCAAAGGAGGAGATTGAAAAGCTAAAGTTAGAATACTCACAAATGAGAGGCAAGGAATTGGATGGTTTGAGCCTTAGAGATCTACAAAACCTTGAGAATCAATTGCGGGATGCTATATTATCTGTCAAAGACAAGAAGGAACAAGTAATTTTGGGGCAACTTGAGATATCCAAGTCACAGGCGCAAGTGGCCATATTAGAGAACTTGACCCTGCGAAATCATCTTGAGGAGTTACATCAGAAAAATAATACACTATATTTGGAGGCCAGTCCCCTTGAGAGTCTTTGCTTCTCAGAATCAAAAACTGCTTCTACCAATGGGGTAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGAAAATGAGCACTCAAGAATATCCTTGCACTTGGGGTTATCATTGGATGGTCAAGGTAAACTGAAAAGAAGAAGATCTATTGAAGGTACCAGCAATGACAGAGGGTTTCCATTAGAGTTAGAGGGAGATGCAAATTTAATCGATGATCCATCTCATCAACTTCGTTTGTAG 882 40.36 MLEEKENQEGESSIKIKRKTMGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDSEVAIIVFSSTGRLYEFSSTNMEHTLSRYRGKGGDLELDFSREIVEHTIEQPPSDVKPSKEEIEKLKLEYSQMRGKELDGLSLRDLQNLENQLRDAILSVKDKKEQVILGQLEISKSQAQVAILENLTLRNHLEELHQKNNTLYLEASPLESLCFSESKTASTNGVEAEAEAEAEAEENEHSRISLHLGLSLDGQGKLKRRRSIEGTSNDRGFPLELEGDANLIDDPSHQLRL 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8947294 8950870 + evm.model.ptg000007l.1054 HCH9g1054 551686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1054 293 ProSitePatterns MADS-box domain signature. 23 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g1054 293 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g1054 293 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g1054 293 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g1054 293 SMART madsneu2 21 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g1054 293 ProSiteProfiles K-box domain profile. 109 199 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH9g1054 293 Pfam K-box region 120 193 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH9g1054 293 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 77 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g1054 293 CDD MADS_MEF2_like 22 90 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH9g1054 293 Gene3D - 33 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g1054 293 MobiDBLite consensus disorder prediction 224 246 - -
HCH9g1054 293 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 222 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH9g1054 293 SUPERFAMILY SRF-like 22 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH9g1054 293 Coils Coil 143 166 - -
HCH9g1054 293 MobiDBLite consensus disorder prediction 259 293 - -
HCH9g1054 293 ProSiteProfiles MADS-box domain profile. 21 81 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0377 HCH-Chr6:6478665 HCH9g1054 HCH-Chr9:8947294 6.90E-41 dispersed
HCH6g0579 HCH-Chr6:34015911 HCH9g1054 HCH-Chr9:8947294 2.80E-16 dispersed
HCH6g1023 HCH-Chr6:44976161 HCH9g1054 HCH-Chr9:8947294 1.50E-14 dispersed
HCH9g0326 HCH-Chr9:2032118 HCH9g1054 HCH-Chr9:8947294 3.80E-28 dispersed
HCH9g0327 HCH-Chr9:2041713 HCH9g1054 HCH-Chr9:8947294 1.40E-22 dispersed
HCH9g1054 HCH-Chr9:8947294 HCH2g0259 HCH-Chr2:38948422 2.20E-06 dispersed
HCH9g1054 HCH-Chr9:8947294 HCH12g0712 HCH-Chr12:4438182 2.90E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34187 PF01486 K-box 5.50E-10 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1054 - - - 0.0