Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1093 ATGGCCTTTTTGTGTTATTTGTTCATTTTATTTGTTGGGTTTCTTTCAAAATCTCAACTTGTGGGTGGTGAGCTTCATGATCAAATCACATTGTTATCTATTAAGAAAGAACTTGGAATTCCTGGGTGGGGCTCCAACAACTCAGACTACTGCTCTTGGCCGGGCATTCGATGTGGTTCGAATAATTCCATGGTCGAAATGCTCGATCTTTCTCGTCATTCGCTTCGAGGTAATATAACTGTGATTAGTGACCTCAAAGCCTTGAAATGGCTTGACCTCTCTTACAATGATTTCCATGGGATGATTCCATCAAGCTTTGATAGCTTATCTGAGCTTGAGTTTCTTGACTTGTCATTGAACAAATTTGAAGGTTTGATACCACTGCAATTGGGTGGTCTTAAGAATCTGAAATCATTGAACCTTTCCAATAATTTGCTGGTAGGACAAATACCAGATGAACTTCAGGGCTTACAAAAGTTGCAGGATTTTCAGGTTTCTAGCAACAGATTGAATGGTTCAATACCAAGCTGGGTTGGAAATTTTACTCAGCTCAGAGTTTTTACTGCCTATGAGAATGACTTTGGTGGTATAATTCCAGAGAATCTAGGCTCAGTTTCTGAGCTCCAAGTGTTGAATCTGCATACCAACAAGCTTGAAGGACCAATACCGAGAAGCATTTTCGCTTCAGGAAAGCTGGAATCTTTGGTCCTGACGCAGAACAAATTGACTAGCAATGTTCCTGATGAAATAGGGAACTGTCGAGGCCTTACTAGCGTTCGTATTGGGAACAATGATCTCGTTGGTGTTATTCCTCAAGCTATTGGGAACGTTAGTAGCCTTGCATACTTTGAAGTGGATAATAACCATCTTTCTGGGGGTATAGTGCCTCAGTTTTCTCAATGCTCTAATCTTACTTTGCTGAATCTAGCCTCAAATGGATTCTCTGGGACGATTCCACCGGAACTTGGAGTGCTGATGAATTTGCAGGAGCTAATTCTTTCTGGTAACAGCCTATATGGAGAAATTCCAGGATCAATGCTTGGGTGCAAGAATCTCAACAAACTTGATTTAAGCAGCAACAGATTTAATGGTACTATTCCAACAGATATTTGCAATATAACAAGATTGCAGTACTTGCTTTTGGATCAGAATTCGATAAAAGGTGAGATACCGAATGAGATCGGAAAATGTGCAAAGCTGCTTCAACTGCAACTGGGTAGTAACTATTTAACTGGAAGTATCCCTTCCGAGATCGGTCACATTAAGAACTTGCAGATAGCTTTGAATTTGAGCTTCAACCATCTATATGGACCAGTGCCTCCTGAATTGGGGAAACTTGATAAATTGGTTTCTTTAGATTTATCAAACAATCATCTCTCTGGGGTTATCCCTTCTGAACTCAGGGGCATGTTAAGCTTGATAGAGGTTAATTTTTCAAACAACCTGCTTACTGGTTCAATACCCCCTTTTGTTCCATTCCAAAAGAGTGCAAATTCAAGTTTTCTGGGAAATGATGGCCTTTGTGGAGCACCACTAAGCGTTTCATGTAGAAATTCAATGGGTCCTTACCCTCAAGATTACCATCACAAGGTCTCTTATAAGATAATACTGGCTGTAATTGGTTCTGGGTTGGCAGTTTTTATATCAGTTACTATTGTTGTCCTGCTTTTCGTGATGAAAGAAAAGCAGGAAAAAGCAACGAAATCTTCAGGTACTGCAGACGATGTGACCATCAACGATCAACCAACGATAATAGCAGGAAATGTATTCGATGATAATCTCCGACAGGAAATAGATCTCGAAGCAGTTGTTAAAGCGACTTCTAAGGATTCAAATAAGCTCATCTTTGGTACTTTTAGTACCGTGTACAAGGCGACCATGCCTTCTGGTATGATAGTATCTGTTAAGAGACTGAAATCTATGGATAAGACAATTATTCATCATCAGAGCAAGATGATCAGAGAGCTCGAAAGGTTGGGTAAACTCAATCATGATAATCTATTGGAGCTCATTGGCTATGTAATATATGAAGATGTTGCTCTGTTGCTTCATCAGTACTTACCCAATGGGACATTAGCTCAGCTTCTTCATGAATCCACAAAACAACCTGAATATGAACCTGACTGGCCTACAAGATTTTCAATTGCCATTGGAGCAGCAGAAGGGTTAGCTTTCCTTCATCATGTGGCCATAATCCATCTTGACATTTCATCAAGTAATGTCCTTTTAGATGCCAACTTCAAACCTTTGGTTGGAGAGATAGAGATATCAAAGCTTTTAGACCCATCCAGAGGCACTGCAAGTATCAGTGCAGTTGCAGGTTCATTTGGCTACATTCCCCCAGAATACGCATATACGATGCAAGTTACGGCACCCGGGAATGTTTATAGCTATGGCGTTATCTTGCTTGAGATCCTTACAACCAGACTACCAGTTGATGAGGAATTTGGTGAAGGAGTAGATTTGGTGAAGTGGGTGCATAGTGCTCCGGCGAGGGGTGAAACACCGGAACAGATACTCGATTCAAGGCTGAGCACAGTTTCCTTTGGCTGGAGGAAAGAGATGCTTGCAGCCCTCAAGATTGCATTGTTATGCACTGACAGTATACCAGCAAAAAGGCCAAAAATGAAGAAGGTGGTGGAAATGCTTCTAGAGATCAAGTAA 2664 40.84 MAFLCYLFILFVGFLSKSQLVGGELHDQITLLSIKKELGIPGWGSNNSDYCSWPGIRCGSNNSMVEMLDLSRHSLRGNITVISDLKALKWLDLSYNDFHGMIPSSFDSLSELEFLDLSLNKFEGLIPLQLGGLKNLKSLNLSNNLLVGQIPDELQGLQKLQDFQVSSNRLNGSIPSWVGNFTQLRVFTAYENDFGGIIPENLGSVSELQVLNLHTNKLEGPIPRSIFASGKLESLVLTQNKLTSNVPDEIGNCRGLTSVRIGNNDLVGVIPQAIGNVSSLAYFEVDNNHLSGGIVPQFSQCSNLTLLNLASNGFSGTIPPELGVLMNLQELILSGNSLYGEIPGSMLGCKNLNKLDLSSNRFNGTIPTDICNITRLQYLLLDQNSIKGEIPNEIGKCAKLLQLQLGSNYLTGSIPSEIGHIKNLQIALNLSFNHLYGPVPPELGKLDKLVSLDLSNNHLSGVIPSELRGMLSLIEVNFSNNLLTGSIPPFVPFQKSANSSFLGNDGLCGAPLSVSCRNSMGPYPQDYHHKVSYKIILAVIGSGLAVFISVTIVVLLFVMKEKQEKATKSSGTADDVTINDQPTIIAGNVFDDNLRQEIDLEAVVKATSKDSNKLIFGTFSTVYKATMPSGMIVSVKRLKSMDKTIIHHQSKMIRELERLGKLNHDNLLELIGYVIYEDVALLLHQYLPNGTLAQLLHESTKQPEYEPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVLLDANFKPLVGEIEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHSAPARGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLLEIK 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12976456 12979252 + evm.model.ptg000007l.1093 HCH9g1093 551725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1093 887 SUPERFAMILY Protein kinase-like (PK-like) 612 883 IPR011009 -
HCH9g1093 887 SUPERFAMILY L domain-like 40 305 - -
HCH9g1093 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 687 887 - -
HCH9g1093 887 Gene3D Ribonuclease Inhibitor 26 169 IPR032675 -
HCH9g1093 887 SMART LRR_typ_2 157 181 IPR003591 -
HCH9g1093 887 SMART LRR_typ_2 133 156 IPR003591 -
HCH9g1093 887 SMART LRR_typ_2 446 469 IPR003591 -
HCH9g1093 887 SMART LRR_typ_2 85 108 IPR003591 -
HCH9g1093 887 SMART LRR_typ_2 230 253 IPR003591 -
HCH9g1093 887 SMART LRR_typ_2 205 229 IPR003591 -
HCH9g1093 887 SMART LRR_typ_2 373 397 IPR003591 -
HCH9g1093 887 SMART LRR_typ_2 109 132 IPR003591 -
HCH9g1093 887 SMART LRR_typ_2 325 349 IPR003591 -
HCH9g1093 887 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 225 520 - -
HCH9g1093 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 731 743 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g1093 887 Pfam Leucine Rich Repeat 448 470 IPR001611 GO:0005515(InterPro)
HCH9g1093 887 Pfam Leucine Rich Repeat 231 253 IPR001611 GO:0005515(InterPro)
HCH9g1093 887 Pfam Leucine Rich Repeat 135 157 IPR001611 GO:0005515(InterPro)
HCH9g1093 887 Pfam Leucine Rich Repeat 303 324 IPR001611 GO:0005515(InterPro)
HCH9g1093 887 Gene3D Phosphorylase Kinase; domain 1 574 686 - -
HCH9g1093 887 Gene3D Ribonuclease Inhibitor 229 519 IPR032675 -
HCH9g1093 887 Pfam Protein tyrosine and serine/threonine kinase 613 881 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g1093 887 ProSiteProfiles Protein kinase domain profile. 608 887 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g1093 887 SUPERFAMILY L domain-like 270 513 - -
HCH9g1093 887 Gene3D Transferase(Phosphotransferase) domain 1 687 887 - -
HCH9g1093 887 Pfam Leucine rich repeat 327 386 IPR001611 GO:0005515(InterPro)
HCH9g1093 887 Pfam Leucine rich repeat 81 121 IPR001611 GO:0005515(InterPro)
HCH9g1093 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 578 686 - -
HCH9g1093 887 CDD STKc_IRAK 617 886 - -
HCH9g1093 887 Pfam Leucine rich repeat N-terminal domain 27 58 IPR013210 -
HCH9g1093 887 Gene3D Ribonuclease Inhibitor 170 228 IPR032675 -
HCH9g1093 887 PANTHER RECEPTOR-LIKE PROTEIN 55 53 175 - -
HCH9g1093 887 FunFam Nuclear pore complex protein NUP107 26 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g1093 HCH-Chr9:12976456 HCH14g0409 HCH-Chr14:33102975 2.80E-52 dispersed
HCH9g1093 HCH-Chr9:12976456 HCH12g1464 HCH-Chr12:39998509 7.50E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81780 PF00069 Pkinase 1.70E-27 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1093 - - - 0.0