Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1095 ATGGGAACTCCAGAATTCCCTAATCTCGGTAAACATTGCAGCGTCGAAGATTGTAAATTGATCGATTTCTTGCCTTTTACTTGCGATTGCTGTCACCAGGTCTTCTGTTTGGAGCACCGTAGTTACAAGAAGCATAGTTGTCCCAACGCTGATAGACAGGATGTCACAGTTGTCATATGTCCACTCTGTGCCAAAGGGGTTCGTTTAATTCCGGATCAAGATGCTAATATTACTTGGGAGTTACATGTTAACACTGAATGTGATCCATCAAATTTTGATAAAGTCACAAAGAAAAGAAAGTGCCCTGTACCTGGCTGCAGGGAGTTATTAACCTTTTCAAACACAATCAAGTGTAGGGACTGCCTGGTAGACCACTGTTTGAAGCACCGTTTTGGACTTGACCATAAATGTCCCGGACCCAAGAAACCAGAACCAGTCTCTCGATTTATTGGTCTTTTAAGTAGAAGTGGAAAAGATGAGAAAAGGCCTAACAAATCATCGGCTACATCTTCACCTAAGTGGGCTACTAGCTTTTTTAATGCAGCCTCAACTGTTAAAGCCTCAGCCGAGGCAAGCATGGCGAAGTTGACAAATGAATTTAGTCATGTCTGGAAAACATCCAGCAGCAGCGGAAGTGGAGATGGACAAGTAGAGGAATGTCCGCAATGTGGTGCGAAGTTTTCCTCTGTTACATCGTTAGTAGAGCACGTGGAAAAAGTCCATGAAAGGTCTGGCAATCGATCGGGAGTGAAGAAGGTTGTAATCGATGCTTGTCCAAAGTGTAGTAGAGGATTTTATGATCCCGTTGCCCTTGTGGAGCATGTTGAGAAGGATCATGGTGGTACTTCGAAAGCTTGA 858 43.71 MGTPEFPNLGKHCSVEDCKLIDFLPFTCDCCHQVFCLEHRSYKKHSCPNADRQDVTVVICPLCAKGVRLIPDQDANITWELHVNTECDPSNFDKVTKKRKCPVPGCRELLTFSNTIKCRDCLVDHCLKHRFGLDHKCPGPKKPEPVSRFIGLLSRSGKDEKRPNKSSATSSPKWATSFFNAASTVKASAEASMAKLTNEFSHVWKTSSSSGSGDGQVEECPQCGAKFSSVTSLVEHVEKVHERSGNRSGVKKVVIDACPKCSRGFYDPVALVEHVEKDHGGTSKA 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13040786 13042952 - evm.model.ptg000007l.1095 HCH9g1095 551727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1095 285 Gene3D - 2 58 IPR035896 -
HCH9g1095 285 Gene3D - 86 151 IPR035896 -
HCH9g1095 285 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270(InterPro)
HCH9g1095 285 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270(InterPro)
HCH9g1095 285 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270(InterPro)
HCH9g1095 285 Pfam AN1-like Zinc finger 101 142 IPR000058 GO:0008270(InterPro)
HCH9g1095 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 284 IPR013087 -
HCH9g1095 285 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270(InterPro)
HCH9g1095 285 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
HCH9g1095 285 Gene3D Classic Zinc Finger 182 284 - -
HCH9g1095 285 ProSitePatterns Zinc finger C2H2 type domain signature. 258 279 IPR013087 -
HCH9g1095 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 246 IPR013087 -
HCH9g1095 285 SMART c2h2final6 218 241 IPR013087 -
HCH9g1095 285 SMART c2h2final6 256 279 IPR013087 -
HCH9g1095 285 SMART c2h2final6 99 129 IPR013087 -
HCH9g1095 285 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
HCH9g1095 285 ProSitePatterns Zinc finger C2H2 type domain signature. 220 241 IPR013087 -
HCH9g1095 285 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270(InterPro)
HCH9g1095 285 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 250 - GO:0005737(PANTHER)
HCH9g1095 285 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0824 HCH-Chr11:38666922 HCH9g1095 HCH-Chr9:13040786 2.80E-15 dispersed
HCH9g0177 HCH-Chr9:1047732 HCH9g1095 HCH-Chr9:13040786 8.40E-31 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34189 PF01428 zf-AN1 1.40E-07 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1095 - - - 0.0