Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g1095 | ATGGGAACTCCAGAATTCCCTAATCTCGGTAAACATTGCAGCGTCGAAGATTGTAAATTGATCGATTTCTTGCCTTTTACTTGCGATTGCTGTCACCAGGTCTTCTGTTTGGAGCACCGTAGTTACAAGAAGCATAGTTGTCCCAACGCTGATAGACAGGATGTCACAGTTGTCATATGTCCACTCTGTGCCAAAGGGGTTCGTTTAATTCCGGATCAAGATGCTAATATTACTTGGGAGTTACATGTTAACACTGAATGTGATCCATCAAATTTTGATAAAGTCACAAAGAAAAGAAAGTGCCCTGTACCTGGCTGCAGGGAGTTATTAACCTTTTCAAACACAATCAAGTGTAGGGACTGCCTGGTAGACCACTGTTTGAAGCACCGTTTTGGACTTGACCATAAATGTCCCGGACCCAAGAAACCAGAACCAGTCTCTCGATTTATTGGTCTTTTAAGTAGAAGTGGAAAAGATGAGAAAAGGCCTAACAAATCATCGGCTACATCTTCACCTAAGTGGGCTACTAGCTTTTTTAATGCAGCCTCAACTGTTAAAGCCTCAGCCGAGGCAAGCATGGCGAAGTTGACAAATGAATTTAGTCATGTCTGGAAAACATCCAGCAGCAGCGGAAGTGGAGATGGACAAGTAGAGGAATGTCCGCAATGTGGTGCGAAGTTTTCCTCTGTTACATCGTTAGTAGAGCACGTGGAAAAAGTCCATGAAAGGTCTGGCAATCGATCGGGAGTGAAGAAGGTTGTAATCGATGCTTGTCCAAAGTGTAGTAGAGGATTTTATGATCCCGTTGCCCTTGTGGAGCATGTTGAGAAGGATCATGGTGGTACTTCGAAAGCTTGA | 858 | 43.71 | MGTPEFPNLGKHCSVEDCKLIDFLPFTCDCCHQVFCLEHRSYKKHSCPNADRQDVTVVICPLCAKGVRLIPDQDANITWELHVNTECDPSNFDKVTKKRKCPVPGCRELLTFSNTIKCRDCLVDHCLKHRFGLDHKCPGPKKPEPVSRFIGLLSRSGKDEKRPNKSSATSSPKWATSFFNAASTVKASAEASMAKLTNEFSHVWKTSSSSGSGDGQVEECPQCGAKFSSVTSLVEHVEKVHERSGNRSGVKKVVIDACPKCSRGFYDPVALVEHVEKDHGGTSKA | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 13040786 | 13042952 | - | evm.model.ptg000007l.1095 | HCH9g1095 | 551727 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g1095 | 285 | Gene3D | - | 2 | 58 | IPR035896 | - | |
HCH9g1095 | 285 | Gene3D | - | 86 | 151 | IPR035896 | - | |
HCH9g1095 | 285 | SMART | AN1_Zf_4 | 101 | 142 | IPR000058 | GO:0008270(InterPro) | |
HCH9g1095 | 285 | SMART | AN1_Zf_4 | 13 | 52 | IPR000058 | GO:0008270(InterPro) | |
HCH9g1095 | 285 | Pfam | AN1-like Zinc finger | 13 | 51 | IPR000058 | GO:0008270(InterPro) | |
HCH9g1095 | 285 | Pfam | AN1-like Zinc finger | 101 | 142 | IPR000058 | GO:0008270(InterPro) | |
HCH9g1095 | 285 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 256 | 284 | IPR013087 | - | |
HCH9g1095 | 285 | ProSiteProfiles | Zinc finger AN1-type profile. | 95 | 145 | IPR000058 | GO:0008270(InterPro) | |
HCH9g1095 | 285 | FunFam | AN1-type zinc finger protein 2B isoform X1 | 3 | 64 | - | - | |
HCH9g1095 | 285 | Gene3D | Classic Zinc Finger | 182 | 284 | - | - | |
HCH9g1095 | 285 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 258 | 279 | IPR013087 | - | |
HCH9g1095 | 285 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 218 | 246 | IPR013087 | - | |
HCH9g1095 | 285 | SMART | c2h2final6 | 218 | 241 | IPR013087 | - | |
HCH9g1095 | 285 | SMART | c2h2final6 | 256 | 279 | IPR013087 | - | |
HCH9g1095 | 285 | SMART | c2h2final6 | 99 | 129 | IPR013087 | - | |
HCH9g1095 | 285 | SUPERFAMILY | AN1-like Zinc finger | 6 | 50 | IPR035896 | - | |
HCH9g1095 | 285 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 220 | 241 | IPR013087 | - | |
HCH9g1095 | 285 | ProSiteProfiles | Zinc finger AN1-type profile. | 7 | 55 | IPR000058 | GO:0008270(InterPro) | |
HCH9g1095 | 285 | PANTHER | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED | 5 | 250 | - | GO:0005737(PANTHER) | |
HCH9g1095 | 285 | SUPERFAMILY | AN1-like Zinc finger | 93 | 143 | IPR035896 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0824 | HCH-Chr11:38666922 | HCH9g1095 | HCH-Chr9:13040786 | 2.80E-15 | dispersed | |
HCH9g0177 | HCH-Chr9:1047732 | HCH9g1095 | HCH-Chr9:13040786 | 8.40E-31 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34189 | PF01428 | zf-AN1 | 1.40E-07 | No_clan | HCH | TF |
Pathway information
