Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1098 ATGGAGCTTGATTCTAATTCTGGGAAACCATTGAAACAGATTGGGGGTCAGGTTTGTCAGATCTGCAGTGATTCCGTTGGAAAGACGGCCGACGGTGAACCGTTCGTCGCCTGCGACGTTTGTTCGTTTCCGGTTTGCCGGCCGTGTTATGAATATGAAAGGAAAGATGGGAATCAATCTTGCCCTCAATGCAAGACCAAATATAAATGGCATAAAGGAAGTCCACCGGTTAATGGAGAAGCAGTCGAAGATGGTGATGTTAATGGAGTGGCAAATGAAGTGAATTACAAGTCAGGGGGACAAGATAGAAGTTATAAGATTCCAGAGCGTACGCTTAGCTGGGATACTAATTATGATAAGGAAGGAGCTTTTAATCATATTCCTTTGCTTACCACTGGACGATCTGTTTCTGGAGAACTATCAGCTGCGTCTCCCGAGCGGCTCTCCATGGCGTCCCCAGAAAGTGGGATTCGGGCTAATTATAGAATCATGGATCAAGCGAGAGATTCGGGATCAGCTAGGTTTGGCAATGTGGCCTGGAAAGAAAGAATAGATAGTTGGAAGGTGAAGCAGGAAAAAGGTGTTCCACCAATGAGTGTCAGTCATGCACCTTCTGAAGGTAGGGGCGGTGCAGATTTTGATGCCAGTACTGATGTTGTTATGGATGACTCTTTACTGAATGATGAAGCCCGCCAGCCTTTATCGAGGAAGGTTTCAATTCCATCCTCCAAGATTAATCCTTATAGGATGGTCATTGTTCTACGGCTTGTTATTCTTTCCATCTTCTTGCACTACCGTATAACAAACCCTGTTCCCAATGCCTATGCTTTGTGGTTAATCTCAGTGATTTGTGAGATATGGTTTGCAATATCTTGGATATTGGATCAGTTCCCCAAATGGCTTCCTGTGAACCGTGAAACCTATCTTGACAGGCTAGCTCTACGATATGACCGTGAAGGAGAGCCATCTCAGTTGGCTGCTGTTGACATTTTTGTCAGTACTGTCGACCCTCTAAAAGAACCTCCTCTTGTCACAGCCAATACGGTTCTATCAATTCTCTCTGTGGACTATCCAGTCGATAAAGTTTCTTGCTATGTCTCAGATGATGGAGCTGCTATGTTAACATTTGAAGCCTTGTCTGAAACATCAGAATTTGCTAGAAAATGGGTTCCGTTCTGTAAGAAATATAGCATTGAGCCCCGGGCACCAGAGTGGTATTTTGCTCAGAAAATTGACTACCTAAAAGATAAGGTCCATCCATCATTTGTCAAGGATAGGAGAGCAATGAAGAGAGAATATGAGGAGTTTAAAATCCGAGTCAATGGCCTTGTTGCTAAGGCCCAGAAGATTCCTGATGAAGGGTGGGTCATGCAAGATGGCACTCCATGGCCTGGAAATAACACCAGAGATCATCCAGGAATGATACAGGTTTTCTTAGGGCACAGTGGAGGACTTGATACCGAGGGTAATGAGCTTCCACGTTTGGTTTATGTTTCTCGTGAAAAGCGTCCTGGTTTCCAACATCACAAGAAAGCTGGTGCTATGAATGCTCTTGTTCGTGTATCTGCTGTTCTTACCAATGGACCCTTTTTGTTAAATCTTGATTGTGATCATTACATCAACAACAGTAAAGCGTTGCGCGAAGCTATGTGTTTTCTGATGGATCCAAATCTTGGAAAAACAGTTTGCTATGTTCAGTTTCCCCAGAGATTTGACGGGATTGATAGAAATGATCGATATGCCAACCGTAACACTGTTTTCTTCGATATCAATTTACGTGGCTTGGATGGCATCCAAGGTCCAGTTTATGTCGGAACTGGTTGTGTTTTCAACCGAACTGCATTGTACGGCTATGAACCTCCACTCAAGCCCAAGCATAAAAAGGCAGGGCTACTATCCAGTTGCTTCGGGAAATCGAGAAAGAAAAGCTCTAAATCAAAACGAAAGGACTCTGATAAGAAGCAAACTAATAAGAATGTTGATCCCACCGTGCCCATATTCAACCTTGAGGATATTGAAGAAGGAGTTGAAGGTGCTGGGTTTGATGATGAGAAGTCACTACTAATGTCACAGATGAGCCTGGAGAAGAGGTTCGGTCAATCAGCTGTATTTGTTGCTTCAACACTAATGGAGAATGGTGGTGTGCCACAATCTGCCACTCCAGAATCTCTACTTAAAGAAGCGATTCATGTCATCAGTTGTGGATATGAGGACAAAACGGATTGGGGAAGTGAAATTGGGTGGATCTATGGTTCTGTCACGGAGGATATCCTGACAGGGTTCAAGATGCATGCCCGTGGTTGGAGATCAATCTATTGCATGCCAGAGCGAGCTGCATTTAAAGGATCTGCTCCTATAAATCTTACTGATCGTCTAAACCAAGTGCTTCGGTGGGCATTAGGTTCGGTTGAAATTCTTTTTAGTCGGCATTGCCCTATATGGTATGGTTATAGTGGAAGGCTGAAATGGCTTGAGAGATTTGCTTATGTTAACACCACCATTTACCCTATAACAGCCATTCCTCTTCTTATGTATTGTACTTTGCCAGCAATATGTCTACTCACTGGGAAGTTTATTATTCCGCAGATAAGCAATCTTGCCAGCATCTGGTTCATTTCTCTCTTTCTTTCCATCTTCGCCACTGGTATTCTGGAAATGAGATGGAGTGGTGTTGGAATCGATGAATGGTGGAGAAACGAACAGTTTTGGGTTATAGGAGGTGTGTCAGCCCATCTATTTGCTGTTTTCCAAGGTTTGCTGAAAGTTCTTGCTGGAATCGATACAAATTTCACTGTTACTTCAAAAGCATCTGATGAAGATGGAGATTTTGCTGAACTTTACATGTTTAAGTGGACCACTCTACTCATTCCCCCAACTACACTCCTAATAATTAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCCATTAACAGTGGTTATCAATCTTGGGGCCCTCTTTTTGGTAAACTTTTCTTTGCTTTTTGGGTGATTATTCATCTGTATCCCTTCCTCAAGGGTCTGATGGGCCGCCAAAACCGAACTCCTACAATTGTGGTTGTATGGTCCATTCTCCTTGCTTCAATCTTCTCCCTGTTATGGGTTCGAATCGATCCATTCACAACCCGAGTAACTGGTCCAGATGTTGAACAGTGTGGAATCAACTGCTAA 3171 43.3 MELDSNSGKPLKQIGGQVCQICSDSVGKTADGEPFVACDVCSFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAVEDGDVNGVANEVNYKSGGQDRSYKIPERTLSWDTNYDKEGAFNHIPLLTTGRSVSGELSAASPERLSMASPESGIRANYRIMDQARDSGSARFGNVAWKERIDSWKVKQEKGVPPMSVSHAPSEGRGGADFDASTDVVMDDSLLNDEARQPLSRKVSIPSSKINPYRMVIVLRLVILSIFLHYRITNPVPNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKREYEEFKIRVNGLVAKAQKIPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKTVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKAGLLSSCFGKSRKKSSKSKRKDSDKKQTNKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPERAAFKGSAPINLTDRLNQVLRWALGSVEILFSRHCPIWYGYSGRLKWLERFAYVNTTIYPITAIPLLMYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13073945 13079855 - evm.model.ptg000007l.1098 HCH9g1098 551730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1098 1056 Pfam Cellulose synthase 328 1049 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
HCH9g1098 1056 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 236 1025 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
HCH9g1098 1056 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 447 619 IPR029044 -
HCH9g1098 1056 Pfam Zinc-binding RING-finger 9 85 IPR027934 -
HCH9g1098 1056 FunFam Cellulose synthase 445 619 - -
HCH9g1098 1056 CDD mRING-HC-C4C4_CesA 17 67 - -
HCH9g1098 1056 ProSiteProfiles Zinc finger RING-type profile. 19 65 IPR001841 -
HCH9g1098 1056 SUPERFAMILY RING/U-box 5 84 - -
HCH9g1098 1056 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 92 IPR013083 -
HCH9g1098 1056 MobiDBLite consensus disorder prediction 637 662 - -
HCH9g1098 1056 SUPERFAMILY Nucleotide-diphospho-sugar transferases 342 871 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0751 HCH-Chr11:36647449 HCH9g1098 HCH-Chr9:13073945 1.10E-228 dispersed
HCH12g0354 HCH-Chr12:2028533 HCH9g1098 HCH-Chr9:13073945 0.00E+00 dispersed
HCH3g0724 HCH-Chr3:5180830 HCH9g1098 HCH-Chr9:13073945 0.00E+00 dispersed
HCH7g1301 HCH-Chr7:45921522 HCH9g1098 HCH-Chr9:13073945 4.30E-107 dispersed
HCH8g0949 HCH-Chr8:45694181 HCH9g1098 HCH-Chr9:13073945 0.00E+00 dispersed
HCH8g1534 HCH-Chr8:49394057 HCH9g1098 HCH-Chr9:13073945 2.60E-236 dispersed
HCH9g1098 HCH-Chr9:13073945 HCH2g0720 HCH-Chr2:50892902 4.90E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1098 K10999 - csv:101211779 2047.71