Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1110 ATGGCTCAGAATTTCTTCTCTTATCCTTATCAAAACCCACCTCCACCTTCATCTCCTCCTCTCAAAGAAGCTCTCCCCCTCTTGAGCCTCATAAGCCCGTCAAATCAACAGACTGATGATCGCCAACATCGGCAAGAACGAGAAGAAGATGGTTGCGACGGTGACGGCTCCGTAACGGTTGCACTTCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCAACTGTGCTCTCTGGTTGTTCATCTGAGGTTGATCATGGAGATGGAGATGATTCTGGGCACTCCATCAACAAGCTTAATAAGGGTCAGTATTGGATCCCTACACCCTCTCAAATTCTCATAGGTCCCACCCAGTTTTCTTGCCCTGTTTGCTTCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGACCTGAATCACTAAGAGGCACACAGCCCACAGGCATGCTGAGGCTCCCTTGCTACTGCTGTGCAGCAGGATGCAGAAACAACATTGAGCATCCAAGAGCTAAAGCACTTAAAGATTTTAGAACTCTCCAAACACATTACAAGAGGAAGCATGGGATGAAGCCCTTCATGTGCAGAAAATGTGGGAAAGCCTTTGCTGTTAGGGGAGATTGGAGGACCCATGAGAAGAACTGTGGGAAGCTCTGGTATTGCATTTGTGGGTCTGATTTTAAGCACAAGAGATCTCTGAAAGACCACATCAAGGCCTTTGGAAAAGACCATGGAGCTTATGGTGTTGATAGCTTTGATGAAGATGATGAGCCTGCCTCTGAAGTGGAACAAGATTATGATGAGTCCATGCATTAG 849 46.76 MAQNFFSYPYQNPPPPSSPPLKEALPLLSLISPSNQQTDDRQHRQEREEDGCDGDGSVTVALHIGLPSPSAAEMATVLSGCSSEVDHGDGDDSGHSINKLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAAGCRNNIEHPRAKALKDFRTLQTHYKRKHGMKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGKDHGAYGVDSFDEDDEPASEVEQDYDESMH 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13492435 13494337 + evm.model.ptg000007l.1110 HCH9g1110 551742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1110 282 SUPERFAMILY beta-beta-alpha zinc fingers 120 224 IPR036236 -
HCH9g1110 282 Gene3D Classic Zinc Finger 119 142 - -
HCH9g1110 282 Pfam Zinc finger, C2H2 type 120 139 IPR013087 -
HCH9g1110 282 FunFam Zinc finger protein WIP2 173 255 - -
HCH9g1110 282 MobiDBLite consensus disorder prediction 260 282 - -
HCH9g1110 282 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
HCH9g1110 282 Gene3D Classic Zinc Finger 182 257 - -
HCH9g1110 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
HCH9g1110 282 MobiDBLite consensus disorder prediction 1 54 - -
HCH9g1110 282 MobiDBLite consensus disorder prediction 39 54 - -
HCH9g1110 282 SMART c2h2final6 166 199 IPR013087 -
HCH9g1110 282 SMART c2h2final6 120 142 IPR013087 -
HCH9g1110 282 SMART c2h2final6 204 224 IPR013087 -
HCH9g1110 282 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 203 227 - -
HCH9g1110 282 PANTHER ZINC FINGER PROTEIN WIP2 11 279 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
HCH9g1110 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 224 IPR013087 -
HCH9g1110 282 FunFam zinc finger protein WIP2-like 119 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1249 HCH-Chr10:44385413 HCH9g1110 HCH-Chr9:13492435 8.60E-88 dispersed
HCH4g1190 HCH-Chr4:7956040 HCH9g1110 HCH-Chr9:13492435 6.20E-95 dispersed
HCH11g0605 HCH-Chr11:14092067 HCH9g1110 HCH-Chr9:13492435 5.10E-122 wgd
HCH2g1387 HCH-Chr2:55650887 HCH9g1110 HCH-Chr9:13492435 1.90E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34191 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1110 - - - 0.0