Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1118 ATGGCTCCAACTTTCTTACTTCCATTGTTTCTCTCTTTAACCTTCACATTCTTCCTTCTTGGCTCAGCTTTATCTGAGCTTGAAAATCTTTTAGAGTTCAAATCTTCCATTAAAGATTCAAGGAACTCTCTTTCAAGCTGGTCTTTATCTTCTTCTGCTACCCATTATTGTAACTGGACTGGGATCTCTTGCATAAACACTTCTTCACTCTCAGTTTCCTCCATTAATCTCCAAGGCTTAAACCTCTCTGGTGAAATATCTGCTTCAATATGTAAACTTCCCTATTTGGCTCATCTTAATCTTGCTGATAATGGATTTAACCAGCCCATTCCTCTTCATCTCTCACTGTGTAGCTCTTTGGAAACTTTGAATCTGAGTAATAATCTCATATGGGGTACAATCCCAGATCAGATTTCTGAGTTTCATTCACTGAAAGTTCTTGATTTTGGGATGAATCATATTGAAGGGAAGATTCCAGAGAGTATTGGGTCATTCAAGAATCTACAGACTCTCAATTTAAGAAGCAACTTGCTTTCAGGTAGAGTGCCTTCTGTGATTTTTCACAATTTGACTGAGCTTCTTGTTCTTGATTTGTCTGAAAATCCATATCTTTTAAGTGATATTCCTAGTGATATTGGGAAGTTAGAGAAGCTCGAGCAGCTGTTTCTTCAAAGTTCTGGTTTTTATGGGGAAATTCCTGATTCCTTATTGAGCTTGCTTAGTTTGAAAATTTTAGACCTTTCACAGAATAATCTTACTGGAAGACTTCCTTTGATGTTAGGTTCTTCACTGAAGAACTTGGTGTATTTTGATGTTTCACAGAATAAGCTTATGGGGTCATTCCCAGATGGGATTTGTAGTAGTAAGGGCCTTATAAATCTCAGTCTCCATACCAATTTCTTTAGTGGGACAGTACCCAACTTTTTAAATCAATGCTTGAATCTTGAGAAGTTTCAAGTTCAGAATAATGGATTTTCTGGTGATTTCCCCAATGCTTTGTGGTCATTACCTAAAGTTAAGCTTATCAGAGCTGAAAACAATGCATTTTCTGGTGAAGTACCAGAATCAATATCAATGGCTGTTCATCTAGAGCAAGTTCAGCTGGACAACAACACTTTTAGTGGTAAAATACCGCAGGGTCTCGGGATGATTCGGAACTTATATAGATTCTCTGCATCGGTCAATGGATTTCATGGTGAATTGCCACCAAATTTCTGTGACTCACCAGTGATGAGTATAATTAATCTATCCCACAATTCTCTTTCTGGTCGAATTCCGGAGCTGAAAAATTGTAAGAAATTAGTCTCATTGTCCTTAGCAGGCAACAGTCTTACTGGACATATACCTCCTTCCCTGGCAGATTTACCAGTGTTAACTTATCTTGATCTTTCTGAGAATAATCTCACTGGTCCAATCCCTCAAAGACTTCAAAACTTAAAGCTTGCTCTCTTCAATGTTTCATTCAATCAACTATCTGGTGCAGTTCCCTTCTCTTTAATTTCAGGCCTACCAGCATCGTTCCTGCAAGGAAATCCTGACCTTTGTGGCCCGGGTTTGCAAACTCCTTGTTCCGAAGGCCGTCCAGGAAACCATTCTTCTGGATTGACAAAACTGGCATGTGCCCTGATCTCTGTAGCTTGTGTTTTAGGATTTATGAGTTTTGCTGCTGGGTTTATTTTGTATTATCGATCCTACAAGCAAAAATCTCAAATCTCAAATTGGCATTCAGTCTACTTCTATCCTCTTAGAATCAGTGAACAAGATTTAATAATGGGGATGAATGAGAAAAGTGCACAAGGATGCGGAGGACCTTTTGGCCGAGTTTACATTTTAAGTTTACCGAGTGCCGAATTGATTGCCGTAAAGAAACTGGTTAACTTTGGAAGCCGTTCTTGGAAATCTTTAAAAGCTGAGATCAAGACATTAGCCAAGATCAGGCACAAGAACATCATCAAAATTCTGGGGTTCTGCCATTCTGATGATTCCATCCTTTTGATTTACGAATTCTTACAGAAAGGAAGCTTGAGTGACTTCATCTGCAGACCTGATTCTTGTCTGAATTGGAATGTGAGACTGCAAATTGCCATTGAGGTTGCTCAAGGACTAGCATACATTCACAAGGATTATGTTCCACATTTACTGCATAGAAATGTCAAAGCATCTAATATTCTATTGGATGCAGACTTTATACCAAAGCTCACAGATTTTGCTCTTGACCATATTGTGGGAGAATCTGCATTTCAGTCAACTGTGGCTTCAGAATCTGCCAACTCCTGCTATATTGCACCAGAGTATGGATACAACAAAAAAGGAACAGAACAGATGGATGTCTACAGCTTTGGTGTTGTGTTGTTAGAGCTGGTGACTGGACGACAAGCCGAGCGAACAGATTCAACAGACTCTCTTGATGTTATCCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTTTCCAAGTTCTGGACTCGAAGCTATCGAAAGATTCCCAACAAGAGATGCTGAGAGTTCTGGACATTGCCCTCCAGTGCACTTCCATGATGCCTGAAAAACGACCATCGATGCTTGAAGTTGCAAAAGCACTTCAACAGATTGGTCCAGCGACAAAAATACCCGATAGAGACTACTCGATCGCAGAGGATGGTTTGGTTCCAACCTGA 2661 39.83 MAPTFLLPLFLSLTFTFFLLGSALSELENLLEFKSSIKDSRNSLSSWSLSSSATHYCNWTGISCINTSSLSVSSINLQGLNLSGEISASICKLPYLAHLNLADNGFNQPIPLHLSLCSSLETLNLSNNLIWGTIPDQISEFHSLKVLDFGMNHIEGKIPESIGSFKNLQTLNLRSNLLSGRVPSVIFHNLTELLVLDLSENPYLLSDIPSDIGKLEKLEQLFLQSSGFYGEIPDSLLSLLSLKILDLSQNNLTGRLPLMLGSSLKNLVYFDVSQNKLMGSFPDGICSSKGLINLSLHTNFFSGTVPNFLNQCLNLEKFQVQNNGFSGDFPNALWSLPKVKLIRAENNAFSGEVPESISMAVHLEQVQLDNNTFSGKIPQGLGMIRNLYRFSASVNGFHGELPPNFCDSPVMSIINLSHNSLSGRIPELKNCKKLVSLSLAGNSLTGHIPPSLADLPVLTYLDLSENNLTGPIPQRLQNLKLALFNVSFNQLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSEGRPGNHSSGLTKLACALISVACVLGFMSFAAGFILYYRSYKQKSQISNWHSVYFYPLRISEQDLIMGMNEKSAQGCGGPFGRVYILSLPSAELIAVKKLVNFGSRSWKSLKAEIKTLAKIRHKNIIKILGFCHSDDSILLIYEFLQKGSLSDFICRPDSCLNWNVRLQIAIEVAQGLAYIHKDYVPHLLHRNVKASNILLDADFIPKLTDFALDHIVGESAFQSTVASESANSCYIAPEYGYNKKGTEQMDVYSFGVVLLELVTGRQAERTDSTDSLDVIQWVRRKVNIANGAFQVLDSKLSKDSQQEMLRVLDIALQCTSMMPEKRPSMLEVAKALQQIGPATKIPDRDYSIAEDGLVPT 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13972819 13976020 + evm.model.ptg000007l.1118 HCH9g1118 551750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1118 886 SUPERFAMILY L domain-like 25 287 - -
HCH9g1118 886 Pfam Leucine Rich Repeat 241 261 IPR001611 GO:0005515(InterPro)
HCH9g1118 886 Pfam Leucine Rich Repeat 433 455 IPR001611 GO:0005515(InterPro)
HCH9g1118 886 Pfam Leucine Rich Repeat 458 479 IPR001611 GO:0005515(InterPro)
HCH9g1118 886 Gene3D Phosphorylase Kinase; domain 1 600 670 - -
HCH9g1118 886 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515(InterPro)
HCH9g1118 886 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
HCH9g1118 886 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 263 526 - -
HCH9g1118 886 Gene3D Ribonuclease Inhibitor 24 185 IPR032675 -
HCH9g1118 886 Gene3D Ribonuclease Inhibitor 186 260 IPR032675 -
HCH9g1118 886 Gene3D Ribonuclease Inhibitor 261 526 IPR032675 -
HCH9g1118 886 Pfam Protein tyrosine and serine/threonine kinase 603 861 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g1118 886 Gene3D Transferase(Phosphotransferase) domain 1 671 876 - -
HCH9g1118 886 ProSiteProfiles Protein kinase domain profile. 594 865 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g1118 886 SMART LRR_typ_2 165 189 IPR003591 -
HCH9g1118 886 SMART LRR_typ_2 455 478 IPR003591 -
HCH9g1118 886 SMART LRR_typ_2 264 288 IPR003591 -
HCH9g1118 886 SMART LRR_typ_2 239 263 IPR003591 -
HCH9g1118 886 SMART LRR_typ_2 117 141 IPR003591 -
HCH9g1118 886 SMART LRR_typ_2 190 215 IPR003591 -
HCH9g1118 886 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 670 870 - -
HCH9g1118 886 FunFam Leucine-rich repeat family protein 25 183 - -
HCH9g1118 886 SUPERFAMILY Protein kinase-like (PK-like) 603 867 IPR011009 -
HCH9g1118 886 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 137 IPR050647 -
HCH9g1118 886 FunFam - 588 669 - -
HCH9g1118 886 SUPERFAMILY L domain-like 204 519 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0977 HCH-Chr1:57902003 HCH9g1118 HCH-Chr9:13972819 8.20E-06 dispersed
HCH3g0485 HCH-Chr3:3127966 HCH9g1118 HCH-Chr9:13972819 1.40E-06 dispersed
HCH9g1118 HCH-Chr9:13972819 HCH11g1206 HCH-Chr11:44365952 3.20E-56 dispersed
HCH9g1118 HCH-Chr9:13972819 HCH3g0677 HCH-Chr3:4775996 2.30E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81783 PF07714 PK_Tyr_Ser-Thr 2.40E-38 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1118 - - - 0.0