Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1129 ATGATTTCCTCTTTCCCATTTCCTTCACTCCTCACTTCCTTTCTACTATTCTTTGCCTCTTTCTGTTCCTCTCTCAACTCCGACGGTCTTTCACTTCTAGCTCTGAAAGCCGCCATTGAAACTGACCCAACTCACGTCCTCGATTCATGGTCCGAATTAGACTCTACCCCATGTCATTGGGCCGGGATTCTTTGCACCCACGATCGAGTAACTCAGCTCTTTCTTCCTAACAAAAGCCTCACTGGCTATATCCCATCAGAACTCGGTTTACTTGACTCGCTCCGACGACTCACTCTCTCTTTTAACAATTTCTCTAAACCCATTCCTTCGCATTTATACAATGCCACTAATCTCATCGTTCTTGATCTCTCTCACAACTCACTTTCCGGTCAAGTTTCCGACCAAATCAAAAACCTCAAGAAACTTAAACATTTGGATTTATCTTCCAATTTCCTTAATGGGTCTCTCCCTGAAGGCCTTACCCAGCTCCCTGAACTCGTCGGGACTTTGAATTTGTCTTATAATCTCTTTTCCGGTGCAGTTCCGGCAACGTACGGAAACCTTCCGTTGATAGTGAATCTTGATGTCCGTCATAATAATCTCACCGGAAAAATCCCTCAAATTGGATCGTTATTGAATCAAGGACCGACGGCATTTTCAGGAAACCCTAGCCTTTGTGGGTTTCCGTTACAAACGCAATGTCCCGAAGCTCAAAACCCTAATAATGTCTTTCCGAGCAGTGATAATCCACAAAACCCCAAGAGTATAAACCCTAATTTTCCGAATTTGGGTAGTGACAGAGCGAAAGAGAGAACTCCTGGGTCCGCCATGATTCCGATCGTTTCGGCCATGTTCGTCGTTATCGGCGTTGTGTCGCTCTCCGTGTGGTGGTTTCGGAGGAAACCGGTGGCGGCGGAGGGTAAAATGAGAAAACAAAAAGAAACCGAAGAGTGTGTAGAAGTGGATGTAGAAGGGCAAGAAGGTAAATTCGTAGTAATGGATGAAGGGATGAATTTGGAATTAGAGGATTTGTTGAGGGCATCGGCGTACGTGGTGGGTAAGAGTAGAAGTGGGATAGTGTATAAAGTTGTGGCAGGGAGGGGGGGAGGATCAGGTGTGGCAGGTACCATTGTAGCTGTTAGAAGACTCAATGATGGTGATGCCACGTTGACATTCAAGGATTTTGAATATGAAATGGATACCATTGGTAGGGTCCACCACCTAAATATCGTACGGTTGAGAGCTTATTACTATGCAAGTGATGAGAAATTATTAATCACTGATTTTATAAAAAATGGAAGCTTGCACACTGCCTTACATGGAGACCCCTCCAGTTCTCTGTCACCACTCTCATGGTCTACAAGGTTAAAAATTGCCCAAGGAGCTGCTAGGGGTTTAGCATATATTCATGAATTTGGTGCTCGAAAATATGTTCATGGAAACATAAAATCAACCAAAATCCTTCTCGATGATGATCTCGAGTCTTATATTTCAGGTTTTGGCCTCAATCGTCTTAGCCCAGGAACCCCTAAATTTACTGCAACATCATCCAAAAAGCAAAACTCAAACCATACCATGATAACCTCAATCATGGGGCCAAGCATCTCAACTCCCTCTGCCATGTGCTTGGCGCCCGAGATTCGGGAATCAGGTGGGAAATGCACCCAAAAATGTGATGTCTACTCATTTGGTATTGTGCTCTTGGAACTTTTAACTGGTAGGTTACCAGATGGAGGATCAGAAAATGATGGAAAGGGGTTAGAAAGTTTTGTGAGAAAGGCCTTCCGAGAAGAACGCCCCTTGACAGAGATCATAGACCCGACGCTTGTGCCTGAGAGTCATGCAAAGAAACAAGTGGTTTCGACATTTCACATTGCACTCAATTGCACAGAGCTAGATCCCGAGCTGCGTCCTAGAATGAGAACAGTTTCTGAGAGTCTTGATCGCATCAAATCTCAATGA 1962 44.44 MISSFPFPSLLTSFLLFFASFCSSLNSDGLSLLALKAAIETDPTHVLDSWSELDSTPCHWAGILCTHDRVTQLFLPNKSLTGYIPSELGLLDSLRRLTLSFNNFSKPIPSHLYNATNLIVLDLSHNSLSGQVSDQIKNLKKLKHLDLSSNFLNGSLPEGLTQLPELVGTLNLSYNLFSGAVPATYGNLPLIVNLDVRHNNLTGKIPQIGSLLNQGPTAFSGNPSLCGFPLQTQCPEAQNPNNVFPSSDNPQNPKSINPNFPNLGSDRAKERTPGSAMIPIVSAMFVVIGVVSLSVWWFRRKPVAAEGKMRKQKETEECVEVDVEGQEGKFVVMDEGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGGGSGVAGTIVAVRRLNDGDATLTFKDFEYEMDTIGRVHHLNIVRLRAYYYASDEKLLITDFIKNGSLHTALHGDPSSSLSPLSWSTRLKIAQGAARGLAYIHEFGARKYVHGNIKSTKILLDDDLESYISGFGLNRLSPGTPKFTATSSKKQNSNHTMITSIMGPSISTPSAMCLAPEIRESGGKCTQKCDVYSFGIVLLELLTGRLPDGGSENDGKGLESFVRKAFREERPLTEIIDPTLVPESHAKKQVVSTFHIALNCTELDPELRPRMRTVSESLDRIKSQ 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14515102 14518923 + evm.model.ptg000007l.1129 HCH9g1129 551761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1129 653 Pfam Protein tyrosine and serine/threonine kinase 352 647 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g1129 653 ProSiteProfiles Protein kinase domain profile. 346 653 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g1129 653 SUPERFAMILY L domain-like 24 231 - -
HCH9g1129 653 FunFam Leucine-rich repeat receptor-like protein kinase 141 236 - -
HCH9g1129 653 MobiDBLite consensus disorder prediction 237 271 - -
HCH9g1129 653 Gene3D Transferase(Phosphotransferase) domain 1 430 653 - -
HCH9g1129 653 MobiDBLite consensus disorder prediction 237 262 - -
HCH9g1129 653 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 27 651 IPR046959 -
HCH9g1129 653 Pfam Leucine rich repeat 93 150 IPR001611 GO:0005515(InterPro)
HCH9g1129 653 Gene3D Ribonuclease Inhibitor 24 167 IPR032675 -
HCH9g1129 653 FunFam Leucine-rich repeat receptor-like kinase 30 134 - -
HCH9g1129 653 PRINTS Leucine-rich repeat signature 118 131 - -
HCH9g1129 653 PRINTS Leucine-rich repeat signature 139 152 - -
HCH9g1129 653 SUPERFAMILY Protein kinase-like (PK-like) 351 647 IPR011009 -
HCH9g1129 653 Gene3D Ribonuclease Inhibitor 168 236 IPR032675 -
HCH9g1129 653 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
HCH9g1129 653 Gene3D Phosphorylase Kinase; domain 1 315 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1137 HCH-Chr1:58862562 HCH9g1129 HCH-Chr9:14515102 1.50E-93 dispersed
HCH4g1857 HCH-Chr4:48540912 HCH9g1129 HCH-Chr9:14515102 1.10E-47 dispersed
HCH9g1129 HCH-Chr9:14515102 HCH9g0846 HCH-Chr9:5984425 5.60E-50 dispersed
HCH9g1129 HCH-Chr9:14515102 HCH10g1291 HCH-Chr10:45366271 4.10E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81784 PF07714 PK_Tyr_Ser-Thr 3.30E-25 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1129 - - - 0.0