Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1135 ATGGCTTCCAATATGAAAACCAGCAGCAGCCAAAGCCATAACACTCAAAACCCATATGGAATATTTATTGAATCGTCATCTTCAGCTTCAATCCCTTCAAATTTCATAAGCAAAGAAACAAGTGGAGCTTATGATTTTGGAGAATTAGATCAAGCCCTTTTCCTTTATCTTGATGAACAAGCCCCCTCTTCTACCTCAAATCTTCAACAACATAAACAGAGCAGTGAAATGAAACTTCCAACTTTGAACATTTTCCCATCTCAACCAATGCACATAGACCCCTCATCATCAACAAAGGTCAGTAAGGGGTTAGTTTGTCCTGAGAGTAGCAGTTCAAAGAGCGGAGCATCAGAACCGTCCATTGCATTGACCAACTCACGCAATCATGCCACTGCATCTGGACTCAAACCTGATCCCATCAAAGTTGTTAAGAGTGGAGGAAATTTCAAAGCTCCAAAATCAAATTTTGATCATGAAGAACCCAAGACACCAGATCCTAAGACACTGAGGAGGCTTGCTCAGAATAGAGAAGCAGCAAGGAAAAGTAGGCTTAGAAAGAAGGCATATGTTCAGCAGTTAGAATCAAGTAGAATGAAGCTTGCTCAGCTGGAGCAAGATTTAGAAAGATCTAGATCAGCTCAGGGTATCATCTTTGGTGGGGCTTTTTTAGGAGGAGAACAAGGTTTTCCTCTTGGAACGACCAATCTAAGTACAGAAGCTGCGATGGCGTTCGACATGGAGTACATGAAGTGGTTGGAGGAACATCATGGTCGGATGTGTGAGCTTCGGGCGGCGGTGGAGGAGCATCTGCCGGAGAATGAGCTTCGGCTTTATGTGGAAAACGGCCTGGCTCACTACGAGGAGCTGATGAATCTGAAAGCAATGATGGCCAAAGCAGACGCCTTTCATCTGCTTTCTGGAACTTGGATGACTCTTGCCGAGCGTTGCTTCATGTGGATGGGCGGGTTCAAGCCATCCCAACTCCTTAAGATAATTGTGGGTCAAATAGATCCATTAAGAGAAGAGCAAATAATGGGGATTTATGGGTTACAACAATCAACACAAGTGGCTGAAGAAGCTCTCTCCCATGGACTTGAAGCACTCAATCAATCTCTATCAGAAACCATTACTTCTGATTCATTGATCACTCCACCAAATGTAGCCAATTACATGACTCAGATGGCTATTGCCATTAACAAGCTTTCTACTATCCAAGGCTTTCTTAGACAGGCAGACAATTTGAGGCAACAAACAATTCAAAGGCTACATCAAATGTTAACGACGCATCAAACAGCAAAGTGTTTGCTAGCAATGGCTGAGTATTTCCATCGTCTTCGAACTCTAAGCTCTCTTTGGCTTTCTCAACCTCGTCAGGATTAA 1380 43.26 MASNMKTSSSQSHNTQNPYGIFIESSSSASIPSNFISKETSGAYDFGELDQALFLYLDEQAPSSTSNLQQHKQSSEMKLPTLNIFPSQPMHIDPSSSTKVSKGLVCPESSSSKSGASEPSIALTNSRNHATASGLKPDPIKVVKSGGNFKAPKSNFDHEEPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLAQLEQDLERSRSAQGIIFGGAFLGGEQGFPLGTTNLSTEAAMAFDMEYMKWLEEHHGRMCELRAAVEEHLPENELRLYVENGLAHYEELMNLKAMMAKADAFHLLSGTWMTLAERCFMWMGGFKPSQLLKIIVGQIDPLREEQIMGIYGLQQSTQVAEEALSHGLEALNQSLSETITSDSLITPPNVANYMTQMAIAINKLSTIQGFLRQADNLRQQTIQRLHQMLTTHQTAKCLLAMAEYFHRLRTLSSLWLSQPRQD 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14851883 14862515 - evm.model.ptg000007l.1135 HCH9g1135 551767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1135 459 SUPERFAMILY Leucine zipper domain 167 205 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1135 459 MobiDBLite consensus disorder prediction 85 132 - -
HCH9g1135 459 MobiDBLite consensus disorder prediction 153 167 - -
HCH9g1135 459 MobiDBLite consensus disorder prediction 1 20 - -
HCH9g1135 459 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 165 209 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1135 459 FunFam BZIP family transcription factor 166 216 - -
HCH9g1135 459 Gene3D - 166 214 - -
HCH9g1135 459 Pfam Seed dormancy control 259 332 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH9g1135 459 SMART brlzneu 163 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1135 459 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 170 185 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1135 459 ProSiteProfiles DOG1 domain profile. 241 455 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH9g1135 459 Coils Coil 186 213 - -
HCH9g1135 459 PANTHER TRANSCRIPTION FACTOR TGA9 80 458 - -
HCH9g1135 459 Pfam bZIP transcription factor 167 207 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1135 459 MobiDBLite consensus disorder prediction 85 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0180 HCH-Chr4:1035219 HCH9g1135 HCH-Chr9:14851883 1.00E-84 dispersed
HCH9g1135 HCH-Chr9:14851883 HCH9g1309 HCH-Chr9:41872209 5.40E-84 dispersed
HCH11g0584 HCH-Chr11:10875704 HCH9g1135 HCH-Chr9:14851883 1.00E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34192 PF14144 DOG1 4.90E-28 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1135 K14431 - gmx:100815176 572.007