Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1156 ATGGCTCCTGGAAGCAGTTCTTGCAAAGAAGTTGATTCTCATCCTTCAGTTTCTGGATATGACGTAGCAATGGCTAAATTGGAGACTAGTTCTACATCTACGAAAGCTTTACCTGTTTTGGGTGGGAAACTTGGAATATATTCAACCAATGGTGTTCATGAATTGCTTGAGTGCCCAGTGTGCACAAATCTGATGTACCCTCCGATTCATCAGTGCCCAAATGGCCATACATTGTGTTCAAACTGCAAGATCAGAGTTAACAACTCTTGCCCTACGTGTCGTCATGATCTTGGCAATATAAGATGTTTGGCGCTGGAGAAGGTAGCTGAATCATTGGAAATGCCCTGCAGATATCAGAGTTTGGGTTGTCAAGATATTTTTCCTTACTATAGTAAGCTTAAGCACGAGCAATACTGTCGATTCCGTCCATACAACTGCCCTTATGCGGGATCCGAGTGCTCTGTCACAGGTGACATTCCAACTCTTGTTGCACATCTCAAAGATTATCACAAGGTTGATATGCATGACGGGTGTACCTTCAACCATCGCTATGTGAAATCAAATCCGCATGAAGTTGAAAATGCCACATGGATGCTAACGGTCTTCAACTGTTTTGGAAGGCAGTTTTGCTTGCATTTTGAGGCTTTCCAGATAGGAATGGCACCTGTTTACATGGCATTTTTACGTTTTATGGGCGACGACAATGAGGCGAAAAAGTTTAGCTACAGTTTGGAAGTTGGTGGCAATGGCCGTAAACTGATATGGCAAGGTATTCCTAGGAGCATCCGTGATAGTCACCGAAAAGTTCGTGACAGTCAAGATGGTCTTATCATTCAAAGAAATCTGGCACTGTATTTTTCTGGAGGGGAAAGGCAAGAGCTAAAGCTTAGAATTACAGGTCGAATATGGAAAGAAGAATGA 921 42.78 MAPGSSSCKEVDSHPSVSGYDVAMAKLETSSTSTKALPVLGGKLGIYSTNGVHELLECPVCTNLMYPPIHQCPNGHTLCSNCKIRVNNSCPTCRHDLGNIRCLALEKVAESLEMPCRYQSLGCQDIFPYYSKLKHEQYCRFRPYNCPYAGSECSVTGDIPTLVAHLKDYHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQIGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 16137382 16139789 - evm.model.ptg000007l.1156 HCH9g1156 551788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1156 306 ProSiteProfiles Zinc finger SIAH-type profile. 111 171 IPR013010 GO:0008270(InterPro)
HCH9g1156 306 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 58 93 IPR049548 -
HCH9g1156 306 SUPERFAMILY RING/U-box 52 98 - -
HCH9g1156 306 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 301 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
HCH9g1156 306 FunFam E3 ubiquitin-protein ligase SINAT5-like 167 299 - -
HCH9g1156 306 ProSiteProfiles Zinc finger RING-type profile. 58 94 IPR001841 -
HCH9g1156 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 166 IPR013083 -
HCH9g1156 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 110 IPR013083 -
HCH9g1156 306 CDD RING-HC_SIAHs 56 94 - -
HCH9g1156 306 Pfam Sina, TRAF-like domain 202 299 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
HCH9g1156 306 CDD Sina 172 300 - -
HCH9g1156 306 FunFam E3 ubiquitin-protein ligase SINAT3 110 166 - -
HCH9g1156 306 SUPERFAMILY TRAF domain-like 111 303 - -
HCH9g1156 306 FunFam E3 ubiquitin-protein ligase SINAT5-like 12 109 - -
HCH9g1156 306 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 299 IPR008974 GO:0005515(InterPro)
HCH9g1156 306 Pfam Sina, zinc finger 107 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0636 HCH-Chr1:55344176 HCH9g1156 HCH-Chr9:16137382 2.10E-132 dispersed
HCH9g0396 HCH-Chr9:2504397 HCH9g1156 HCH-Chr9:16137382 1.10E-20 dispersed
HCH2g1428 HCH-Chr2:55963619 HCH9g1156 HCH-Chr9:16137382 1.30E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1156 K04506 - rcu:8260973 584.719