Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH9g1187 | ATGGAAGGAGTTGATATTCCCTCCTTTTTTCTATGCCCAATATCTCTTCAAATAATGAAAGATCCTGTTACGGTTTCCACTGGTATAACCTACGACCGAGAAACCATAGAAAAATGGCTTTTTTCTGAGAGAAAAACCACATGTCCTGTCACCAAACAGCTCTTATCCGATTCCGACTTGACTCCAAACCATACTCTTCGACGATTGATTCAAGCTTGGTGCACTATCAATGCTTCTAATGGCGTAGAAAGAATTCCTACACCAAAACCACCCATCAATAGAATCCAGATCGTTAAGCTTCTTGAAGATGCAAAAATTTCCCCTCTCTCTCAACAAAACTGCCTCCGCCGCCTCCGATCCGTTGCCGCTGAAAACCAAACCAACAAACGTTGCATGGAAGCTGCCGGTGTTGTACAATTCTTGGCTGGAGTTGTGTGCGATTCCATCGACGTGGAATCAATTAACTCCGAAGCTTATTCTGATTATGGATTTGACTTTGTTGGGGAGGCTTTAAGCATTCTTTACAATCTTCATATCTCTGAAAGTGGGCTAAAGTCCTTACTCGGTAACAATGTCGGATTCGTCGGATCGTTAACCAAAGTATTGGAGAAAGGGAGGTATAGCTCTCGGGCTTATGCAGTATTGATTTTGAAATCCATGTTCGTAGTCGCTGACCGAATTCATTTGATTAGCGTAAATAACGGGTTTTTCATGGAAATAGTTCAAGTTCTGAAGGATCAAATTTCGCCCAAGGCCTCAAAAGCTGCATTGAAACTTCTTGTGTCTCTTTGTCACAGTTCAAGAAATAGAGTAAAGGCTGTTGAAGCCGGAGCCGTTAGGGTTTTGGTGGATCTGCTTCTGGATCTCGAAAGCTCGTCTCAGAAACGGGCTTGCGAGATGATATTGGTGACATTGGAGTTGCTGTGTGGCTGTGCAGATGGGCGGGCGGAGCTGTTAAACCATGGAGCTGGAATGGCTGTTGTCTCGAAGAAGATTCTGAGAGTTTCTTCATTGGGAAGTGAGAGAGCGGTGGGAATCTTGTATTCTATTGCTAAGTTCTCTGCCACCTCAAGCGTTGTACAGGAAATGCTACAGCTGGGAATTGTGACCAAGCTTTTCTTATTCCTTCAAGTTGTTGGCAATGGAAACAAAGCTAAAGATAAAGTTAGAGAGATTCTGAAGCTGCATGCTCGAGCATGGAGGAATTCTCCTTGCATACCATTGAATTTGCAATCGTCTTTTCCATCTTAA | 1251 | 43.33 | MEGVDIPSFFLCPISLQIMKDPVTVSTGITYDRETIEKWLFSERKTTCPVTKQLLSDSDLTPNHTLRRLIQAWCTINASNGVERIPTPKPPINRIQIVKLLEDAKISPLSQQNCLRRLRSVAAENQTNKRCMEAAGVVQFLAGVVCDSIDVESINSEAYSDYGFDFVGEALSILYNLHISESGLKSLLGNNVGFVGSLTKVLEKGRYSSRAYAVLILKSMFVVADRIHLISVNNGFFMEIVQVLKDQISPKASKAALKLLVSLCHSSRNRVKAVEAGAVRVLVDLLLDLESSSQKRACEMILVTLELLCGCADGRAELLNHGAGMAVVSKKILRVSSLGSERAVGILYSIAKFSATSSVVQEMLQLGIVTKLFLFLQVVGNGNKAKDKVREILKLHARAWRNSPCIPLNLQSSFPS | 416 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 18222525 | 18223775 | - | evm.model.ptg000007l.1187 | HCH9g1187 | 551819 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH9g1187 | 416 | SUPERFAMILY | ARM repeat | 97 | 376 | IPR016024 | - | |
| HCH9g1187 | 416 | CDD | RING-Ubox_PUB | 7 | 60 | IPR045210 | - | |
| HCH9g1187 | 416 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | IPR013083 | - | |
| HCH9g1187 | 416 | Pfam | U-box domain | 6 | 75 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| HCH9g1187 | 416 | SUPERFAMILY | RING/U-box | 4 | 77 | - | - | |
| HCH9g1187 | 416 | ProSiteProfiles | U-box domain profile. | 5 | 80 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| HCH9g1187 | 416 | SMART | Ubox_2 | 9 | 73 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| HCH9g1187 | 416 | FunFam | RING-type E3 ubiquitin transferase | 1 | 83 | - | - | |
| HCH9g1187 | 416 | Gene3D | - | 95 | 399 | IPR011989 | - | |
| HCH9g1187 | 416 | PANTHER | WDSAM1 PROTEIN | 3 | 410 | IPR045185 | GO:0061630(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0896 | HCH-Chr11:39926611 | HCH9g1187 | HCH-Chr9:18222525 | 3.10E-49 | dispersed | |
| HCH6g1353 | HCH-Chr6:47556230 | HCH9g1187 | HCH-Chr9:18222525 | 8.40E-55 | dispersed | |
| HCH7g1497 | HCH-Chr7:47577991 | HCH9g1187 | HCH-Chr9:18222525 | 1.50E-64 | dispersed | |
| HCH8g0308 | HCH-Chr8:22213946 | HCH9g1187 | HCH-Chr9:18222525 | 1.10E-104 | dispersed | |
| HCH8g0311 | HCH-Chr8:23275006 | HCH9g1187 | HCH-Chr9:18222525 | 1.30E-39 | dispersed | |
| HCH8g0312 | HCH-Chr8:23398085 | HCH9g1187 | HCH-Chr9:18222525 | 3.90E-70 | dispersed | |
| HCH9g0828 | HCH-Chr9:5823482 | HCH9g1187 | HCH-Chr9:18222525 | 3.80E-17 | dispersed | |
| HCH9g1187 | HCH-Chr9:18222525 | HCH11g0480 | HCH-Chr11:5485527 | 1.50E-141 | transposed |
Pathway information