Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1199 ATGAATGATTTATTTTCTTCCGATTCATTCCGGCAAGATCACCGCGACCACCACCACCAATCCATCGAGATGCCCGACGCGCCGTCGTCAACCACCATTAATCTCAACAATTTCTTTGAAGACGTCGAGTCTGTGAAAGGAGAGCTCACAGAGCTCGAACGCCTTCACCGTAGCCTCCAACATTCTCACGAGCAAAGTAAGACTCTCCATAACTCAAAGACCATTAAGGATCTTCGATCACGAATGGAATCTGATGTAACTGCTGCTCTTAAAAAGGCAAAGTTTATTAAGCTCCGTTTGGAGGACCTTGATCGTTCTAATGTCGAAAACCGGAAACTTCCCGGTTGCGGTCCTGGATCCTCCTCTGACCGTTCTCGAACTTCCGTCGTTAACGGATTGAGGAAGAAGCTTTGTGATTCGATGGAGAGTTTCAATAAGTTGAGAGAGCAGATTTCTTCATCCTATAAGGAAACCATTGAACGTAGATATTTCACCATTACCGGTGAAAATCCCGACGAGAAGACCGTTGACTTGCTCATCTCTACAGGTGAAAGCGAGACATTCTTGCAAAAAGCGATTCAGAAACAAGGAAGAGGGAGAGTGTTGGAAGTGATCCAAGAGATACAGGAAAGACACGACGCAGTGAAAGACATGGAAAAGAACCTAAAAGAGTTACACCAAGTTTTCTTGGATATGGCTGTCCTCATTCAATCGCAAGGCCAACAACTGAATGATATTGAAAGCCAAGTCACACGTGCAAACTCACTCATCACTCGTGGCACCACACAGCTTCAGACAGCTAGATTCTACCAGAAAAATACCCGCAAATGGATTTGCATTGGCGTCTCTCTTGTATTACTTATCATCCTAGTAAGTGTCCTCGCCGCCCGACCATGGAAGTAA 903 45.18 MNDLFSSDSFRQDHRDHHHQSIEMPDAPSSTTINLNNFFEDVESVKGELTELERLHRSLQHSHEQSKTLHNSKTIKDLRSRMESDVTAALKKAKFIKLRLEDLDRSNVENRKLPGCGPGSSSDRSRTSVVNGLRKKLCDSMESFNKLREQISSSYKETIERRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGRGRVLEVIQEIQERHDAVKDMEKNLKELHQVFLDMAVLIQSQGQQLNDIESQVTRANSLITRGTTQLQTARFYQKNTRKWICIGVSLVLLIILVSVLAARPWK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19151029 19154356 + evm.model.ptg000007l.1199 HCH9g1199 551831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1199 300 Gene3D - 200 297 - -
HCH9g1199 300 Pfam Syntaxin 37 240 IPR006011 GO:0016020(InterPro)
HCH9g1199 300 SMART SynN_4 30 156 IPR006011 GO:0016020(InterPro)
HCH9g1199 300 FunFam Syntaxin 132 198 297 - -
HCH9g1199 300 SUPERFAMILY t-snare proteins 34 260 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH9g1199 300 SMART tSNARE_6 200 267 IPR000727 -
HCH9g1199 300 Pfam SNARE domain 242 293 IPR000727 -
HCH9g1199 300 ProSitePatterns Syntaxin / epimorphin family signature. 211 250 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
HCH9g1199 300 CDD SNARE_syntaxin1-like 204 266 - -
HCH9g1199 300 Gene3D - 35 162 - -
HCH9g1199 300 MobiDBLite consensus disorder prediction 1 30 - -
HCH9g1199 300 Coils Coil 205 225 - -
HCH9g1199 300 CDD SynN 38 192 IPR006011 GO:0016020(InterPro)
HCH9g1199 300 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 32 162 - -
HCH9g1199 300 PANTHER SYNTAXIN 37 287 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH9g1199 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
HCH9g1199 300 MobiDBLite consensus disorder prediction 8 23 - -
HCH9g1199 300 Coils Coil 35 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0485 HCH-Chr11:5699683 HCH9g1199 HCH-Chr9:19151029 6.00E-109 dispersed
HCH3g0609 HCH-Chr3:4190074 HCH9g1199 HCH-Chr9:19151029 1.40E-88 dispersed
HCH9g0881 HCH-Chr9:6325198 HCH9g1199 HCH-Chr9:19151029 5.80E-58 dispersed
HCH9g1199 HCH-Chr9:19151029 HCH9g1403 HCH-Chr9:46347448 1.70E-65 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1199 K08486 - csv:101213199 476.478