Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH9g1200 | ATGAACAACGGGACCGACAGCGGCGGGTTTCTGTCATCCAGTAACATCGGTGGCTTCGGGTATGGAATTGGAGTCTCTTTAGGCCTTCTTCTTCTCATTACAACCATACTCTTAGCTTCTTACTACTGCACCAGAAACAATATATCACCCATACCTGTAGTTCATCGGCCGCGGCAGATTGATCAAGAAGTTGTCGTCGACATCGGACTCGATCAGGAAACCATTAAAAGCTATCCAAAGTTGCTGTATTCAGAAGCCAAGCTTAAGAAAAACGACTCCACAGCTTCCTGCTGCTCTATTTGTTTAGCAGATTATAAGAGCTCTGATATGCTTCGTCTTTTACCTGACTGTGGTCATCTCTTCCACCTTAAATGTGTCGATCCGTGGCTGCGGCTGCACCCGACATGTCCGGTTTGCCGGACGTCGCCGATCCCGACGCCGCTTTCGACTCCTCTGGCTGAACAAGTTCCATTGGCGACTAGGAGGGATTGA | 492 | 48.78 | MNNGTDSGGFLSSSNIGGFGYGIGVSLGLLLLITTILLASYYCTRNNISPIPVVHRPRQIDQEVVVDIGLDQETIKSYPKLLYSEAKLKKNDSTASCCSICLADYKSSDMLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLATRRD | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 19287052 | 19287543 | - | evm.model.ptg000007l.1200 | HCH9g1200 | 551832 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH9g1200 | 163 | SUPERFAMILY | RING/U-box | 74 | 145 | - | - | |
| HCH9g1200 | 163 | ProSiteProfiles | Zinc finger RING-type profile. | 98 | 140 | IPR001841 | - | |
| HCH9g1200 | 163 | SMART | ring_2 | 98 | 139 | IPR001841 | - | |
| HCH9g1200 | 163 | FunFam | E3 ubiquitin-protein ligase ATL6 | 58 | 145 | - | - | |
| HCH9g1200 | 163 | CDD | RING-H2_EL5-like | 97 | 140 | - | - | |
| HCH9g1200 | 163 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 144 | IPR013083 | - | |
| HCH9g1200 | 163 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 13 | 158 | IPR045899 | - | |
| HCH9g1200 | 163 | Pfam | Ring finger domain | 97 | 140 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0491 | HCH-Chr11:5853283 | HCH9g1200 | HCH-Chr9:19287052 | 5.40E-45 | dispersed | |
| HCH12g1618 | HCH-Chr12:43040279 | HCH9g1200 | HCH-Chr9:19287052 | 1.20E-16 | dispersed | |
| HCH6g1267 | HCH-Chr6:46976968 | HCH9g1200 | HCH-Chr9:19287052 | 7.90E-20 | dispersed | |
| HCH7g1661 | HCH-Chr7:48654921 | HCH9g1200 | HCH-Chr9:19287052 | 1.40E-25 | dispersed | |
| HCH7g1702 | HCH-Chr7:48905488 | HCH9g1200 | HCH-Chr9:19287052 | 2.20E-17 | dispersed | |
| HCH9g1200 | HCH-Chr9:19287052 | HCH13g1105 | HCH-Chr13:36189755 | 6.10E-30 | transposed |
Pathway information