Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH9g1220 | ATGGCCTGTTGGGAGCAGATTGAAACACTTTTTGGAAGTAAAGCATGCATTGAAATGCGGGATTCGGCATCGAGCTTGACAAAACGCCTTGCCCAGACAGCTCAAGAGACCTTTGGTGATTTTGAAGAAGCTGTGGAAAAAGATGTAACAAAAACCGCTGTTCTTGATGGAACATTTCATCCCTTGACTAGTTATGTAATAAACTATGTCAAGTTTTTATTTGACTACCAATCGACTCTGAAGCAACTGTTCCAAGACTTTGATGATGGTGATCCGGAAGCTCAATTAGCAGCAGTAACTACAAGAATTATGCAGGCCCTTCAGAATAATCTTGATGGAAAGTCCAAGCAATACATTGATACCGCATTGACTCAATTATTTCTGATGAACAATATTCACTATATAGTGAGATCTGTGAGAAGATCAGAAGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTGCAGCAGCATGCAAATCAATATAAAAGGATTTCTTGGGCAAAGATTTTGCAATGCCTCACTGTTCAGGCCCAAAATTCCTCATATAGTGGTGGTTTGTCTGGAGATGCAAGCGGTGGACTTTCAAGAGCAATGGTGAAGGATAGGTTTAAGACTTTCAATATCCAATTCGAAGAGCTTCACCTACGGCAATCGCAATGGATTTGTTTTCATCAACATTAA | 699 | 40.34 | MACWEQIETLFGSKACIEMRDSASSLTKRLAQTAQETFGDFEEAVEKDVTKTAVLDGTFHPLTSYVINYVKFLFDYQSTLKQLFQDFDDGDPEAQLAAVTTRIMQALQNNLDGKSKQYIDTALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQAQNSSYSGGLSGDASGGLSRAMVKDRFKTFNIQFEELHLRQSQWICFHQH | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 26260349 | 26261953 | - | evm.model.ptg000007l.1220 | HCH9g1220 | 551852 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH9g1220 | 232 | Pfam | Exo70 exocyst complex subunit C-terminal | 3 | 227 | IPR046364 | GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro) | |
| HCH9g1220 | 232 | PANTHER | EXOCYST COMPLEX PROTEIN EXO70 | 4 | 229 | IPR004140 | GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER) | |
| HCH9g1220 | 232 | Gene3D | Exocyst complex component Exo70 | 1 | 231 | - | - | |
| HCH9g1220 | 232 | SUPERFAMILY | Cullin repeat-like | 4 | 227 | IPR016159 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH9g0449 | HCH-Chr9:2885583 | HCH9g1220 | HCH-Chr9:26260349 | 1.50E-119 | dispersed | |
| HCH9g1220 | HCH-Chr9:26260349 | HCH3g0443 | HCH-Chr3:2826887 | 1.40E-32 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH9g1220 | K07195 | - | csv:105436019 | 379.793 |