Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1244 ATGTCTTCTAGAACTCGCTTGCTTTTATCGGATTTTATAGTATCTTTCATGTGGGTTTGGTCATCGATTCTGATAAAGATATTTGTTTTTGATATCTTGGGTTTCGGCCGTGAACCAATTGGCGAGATTATCAAAGCTGCTCTTTCAATTATCAACATGTTTTTCTTTGCATTATTGGGGAAGATTACTAAAGGAGCTGCTTATAATCCTCTTACCGTCTTATCTGCCGCTTTTTCTGGCGATTTTAGTAACTTTCTTTTCACTGCTGGTGCCAGAATCCCTGCTCAGGTAATTGGAGCCATTACTGGTGTTAGGCTCATTATTCAGACATTTCCTGAAGCTGGACGAGGGCCACGTTTGAATGTTGCCATTCATCACGGTGCACTTACAGAAGGATTGTTAACATTCACTATTGTAATAATATCACTTGGACTATCCAGAAAAATCTCTGGAAATTTCTTCATGAAGACTTGGATCTCAAGTGTCTCCAAGTTGACTCTTCATATTCTTGGCTCTGATCTAACTGGTGGCTGTATGAATCCTGCTTCTGTAATGGGATGGGCATATGCTCGTGGGGATCATATAACCAAAGAACACTTTCTCGTATACTGGATTGCTCCCATAAAAGGAACTATACTAGCAGTTTGGACATTCAAGTTACTGTTTCATCAACCAAAAGAGGAGAAAGTTAATATGAAGAAAAAACCAGAATGA 714 39.08 MSSRTRLLLSDFIVSFMWVWSSILIKIFVFDILGFGREPIGEIIKAALSIINMFFFALLGKITKGAAYNPLTVLSAAFSGDFSNFLFTAGARIPAQVIGAITGVRLIIQTFPEAGRGPRLNVAIHHGALTEGLLTFTIVIISLGLSRKISGNFFMKTWISSVSKLTLHILGSDLTGGCMNPASVMGWAYARGDHITKEHFLVYWIAPIKGTILAVWTFKLLFHQPKEEKVNMKKKPE 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33058922 33061844 + evm.model.ptg000007l.1244 HCH9g1244 551876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1244 237 SUPERFAMILY Aquaporin-like 4 234 IPR023271 -
HCH9g1244 237 PANTHER AQUAPORIN SIP2-1-RELATED 2 236 IPR044226 GO:0015267(InterPro)
HCH9g1244 237 Pfam Major intrinsic protein 5 217 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g1244 237 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g1244 237 PRINTS Major intrinsic protein family signature 130 148 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g1244 237 PRINTS Major intrinsic protein family signature 201 221 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g1244 237 PRINTS Major intrinsic protein family signature 161 183 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g1244 237 PRINTS Major intrinsic protein family signature 88 107 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g1244 237 Gene3D Glycerol uptake facilitator protein. 2 236 IPR023271 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1244 K09875 - csv:101214379 385.571