Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1262 ATGTTCCCCAAAAATTCAGAAATGGGTCTTGAAATTATGGAGCCAAACATCTGCATCAGAGGCTGCTGCTCAAGCAAATCAATTCCCCTTCATCTTCAACCTTCCACTTTTACGCTTCTCTCACCAATTGCCAGAGGGGGGGAGAGTATTGTGTATGAAGGAAGATTAGATGGTAAAAAAGTTGCTGTGAAGAAGCCTATCTTATCTACTTCTGAGGATTTGGATAAGTTCCATAGGGAATTGCAATTGCTATGTGAATTAGATCACCCAGGCATAGTAAAACTGGTTGCGGCAAATGCAAAGCCACCTAGCTATATGTTTTTCTTTGAATTCTACGAGTCTCCAAATCTTGCTGAGAAATTACATGTGGAAGAATGGAATCCGAGCATCGATCAGGTGCTCATGATCACTCTCCAGTTAGCAACGGCTTTGCAATACTTGCATAACTTGGGGATTGCACATAGGGATGTGAAAGCAGCAAATGTTCTTCTTGACAAAGATTTACATCCACGCTTGGCTGATTTTGGTTTAGCAGTACACCATAAAAATCTGAAAGGAATTTCTGCTGAGAACTGGAAGTCATCTGGCAAGCCAACAGGTGGCTTCTATAAGAAAAACATGGTTGGAACACTTATTTATATGGCACCTGAAATATTGAGGAAGGATATACATACAGAACAGTCAGATGTCTACAGTTTTGGCATCTTGATTAATGAGCTTTTGACTGGCGTTGTTCCATATACTGATCTTCGTGCTGAAGCTCAGGCGCACACTGTTTTGGAAATGAATTATACAGAGCAGGTGCTAACAGCGGCTATTGTTTCAGATGGCTTGCGACCAGCTCTTCCTGGTGATGAGTCTGCCACACCATCAAGTTTGTTGTCACTTGTACAGAGGTGCTGGGATCCAAATCCTAGAAATAGACCATCTTTTTCTGATATAGTTATGGAGTTGGAGTCAATTTTGGAGGACAGAAAGGGTTCAGAAGGCATCAGTGTTCTACATCCTGATTTGCGTGGTCAACTTAGTGAGGCTAATGCAAATGTTTGTGTGTATCGTGAGGGAGTTAATTGGTCCTATCAGGGAGAACATATATCTCGAGAAGCTTCTGATGTAGCAAGGTGTGATGTGAGCATTTGGCTTGATACCTCGACTGATCATTTAGCATACTGTCCAATACTTTCTTGGGGATCCTTTGCCACCTGTGGGAGAAGGGAGACCATGGAGGACTCACATTTCCTTTTACCCTATATGTGCAAAGAAGAGGACATCCATGTCTTTGGGATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTAAAGCTATTCCTCGATTCTTGCTAACTTCATGTTCCCGAAGCAGTCCTGCTGATGCATTAGTAGAAGCATTTGTAAAAGTAGATATTGAATTTAGAAAAGAACTCGATTTCTTTCGTAAATCCAAGAAAGTTATACAGAAAGACTGGCATCCTGGTTGCACTGCGGTTGTAGCCCTAATTATTAGAAACAAGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATACTGTGTCGAGCTGGCCATCCAATTGTTTTGAGTAAAGATCACGTTGCAAGCTGCCTCGAGGAGAGAGAGCGTGTCATCAGTGCTGGTGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGTCCTGCTGCTCTTCAGGTTACTCGATCAATTGGTGACGATGATCTGAAGCCAGCTGTAACTGCAGAGCCTGAGATAACAGAGACTGTTTTGTCAGCTCAGGATGATTACATGGTCATGGCCAGTGATGGACTATGGGATGTCCTCAGCAACTCAGAGGTAATTGGCATAATCCGGGACACTGTCAAAGAACCGGGAATGTGCTCCAAGCGACTGGCAACAGAAGCGGCAGCTCGTGGAAGCAAAGATAACATCACGGTAATTGTTGTATTCTTGCATCCAGTATCTACAGCAGAGAGGATTTATTAG 1989 43.34 MFPKNSEMGLEIMEPNICIRGCCSSKSIPLHLQPSTFTLLSPIARGGESIVYEGRLDGKKVAVKKPILSTSEDLDKFHRELQLLCELDHPGIVKLVAANAKPPSYMFFFEFYESPNLAEKLHVEEWNPSIDQVLMITLQLATALQYLHNLGIAHRDVKAANVLLDKDLHPRLADFGLAVHHKNLKGISAENWKSSGKPTGGFYKKNMVGTLIYMAPEILRKDIHTEQSDVYSFGILINELLTGVVPYTDLRAEAQAHTVLEMNYTEQVLTAAIVSDGLRPALPGDESATPSSLLSLVQRCWDPNPRNRPSFSDIVMELESILEDRKGSEGISVLHPDLRGQLSEANANVCVYREGVNWSYQGEHISREASDVARCDVSIWLDTSTDHLAYCPILSWGSFATCGRRETMEDSHFLLPYMCKEEDIHVFGIFDGHRGAAAAEFSAKAIPRFLLTSCSRSSPADALVEAFVKVDIEFRKELDFFRKSKKVIQKDWHPGCTAVVALIIRNKLFVANAGDCRTILCRAGHPIVLSKDHVASCLEERERVISAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEITETVLSAQDDYMVMASDGLWDVLSNSEVIGIIRDTVKEPGMCSKRLATEAAARGSKDNITVIVVFLHPVSTAERIY 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35875538 35898949 - evm.model.ptg000007l.1262 HCH9g1262 551894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1262 662 SUPERFAMILY PP2C-like 389 654 IPR036457 -
HCH9g1262 662 SMART PP2C_4 385 650 IPR001932 -
HCH9g1262 662 SUPERFAMILY Protein kinase-like (PK-like) 31 326 IPR011009 -
HCH9g1262 662 ProSiteProfiles Protein kinase domain profile. 37 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g1262 662 Gene3D Transferase(Phosphotransferase) domain 1 24 339 - -
HCH9g1262 662 SMART PP2C_SIG_2 410 652 IPR001932 -
HCH9g1262 662 CDD PP2Cc 397 652 IPR001932 -
HCH9g1262 662 Pfam Protein phosphatase 2C 398 645 IPR001932 -
HCH9g1262 662 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 386 656 - -
HCH9g1262 662 PANTHER PROTEIN PHOSPHATASE 361 651 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH9g1262 662 Gene3D - 388 657 IPR036457 -
HCH9g1262 662 ProSiteProfiles PPM-type phosphatase domain profile. 395 652 IPR001932 -
HCH9g1262 662 SMART serkin_6 37 321 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g1262 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g1262 662 Pfam Protein kinase domain 40 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0091 HCH-Chr6:1159140 HCH9g1262 HCH-Chr9:35875538 9.90E-29 dispersed
HCH6g1774 HCH-Chr6:50127475 HCH9g1262 HCH-Chr9:35875538 3.50E-28 dispersed
HCH7g0720 HCH-Chr7:8945553 HCH9g1262 HCH-Chr9:35875538 6.80E-16 dispersed
HCH9g0809 HCH-Chr9:5595394 HCH9g1262 HCH-Chr9:35875538 1.80E-12 dispersed
HCH9g1262 HCH-Chr9:35875538 HCH6g0622 HCH-Chr6:37425742 7.90E-28 dispersed
HCH9g1262 HCH-Chr9:35875538 HCH3g1454 HCH-Chr3:52510969 1.90E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81785 PF00069 Pkinase 6.10E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1262 - - - 0.0