Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g1262 | ATGTTCCCCAAAAATTCAGAAATGGGTCTTGAAATTATGGAGCCAAACATCTGCATCAGAGGCTGCTGCTCAAGCAAATCAATTCCCCTTCATCTTCAACCTTCCACTTTTACGCTTCTCTCACCAATTGCCAGAGGGGGGGAGAGTATTGTGTATGAAGGAAGATTAGATGGTAAAAAAGTTGCTGTGAAGAAGCCTATCTTATCTACTTCTGAGGATTTGGATAAGTTCCATAGGGAATTGCAATTGCTATGTGAATTAGATCACCCAGGCATAGTAAAACTGGTTGCGGCAAATGCAAAGCCACCTAGCTATATGTTTTTCTTTGAATTCTACGAGTCTCCAAATCTTGCTGAGAAATTACATGTGGAAGAATGGAATCCGAGCATCGATCAGGTGCTCATGATCACTCTCCAGTTAGCAACGGCTTTGCAATACTTGCATAACTTGGGGATTGCACATAGGGATGTGAAAGCAGCAAATGTTCTTCTTGACAAAGATTTACATCCACGCTTGGCTGATTTTGGTTTAGCAGTACACCATAAAAATCTGAAAGGAATTTCTGCTGAGAACTGGAAGTCATCTGGCAAGCCAACAGGTGGCTTCTATAAGAAAAACATGGTTGGAACACTTATTTATATGGCACCTGAAATATTGAGGAAGGATATACATACAGAACAGTCAGATGTCTACAGTTTTGGCATCTTGATTAATGAGCTTTTGACTGGCGTTGTTCCATATACTGATCTTCGTGCTGAAGCTCAGGCGCACACTGTTTTGGAAATGAATTATACAGAGCAGGTGCTAACAGCGGCTATTGTTTCAGATGGCTTGCGACCAGCTCTTCCTGGTGATGAGTCTGCCACACCATCAAGTTTGTTGTCACTTGTACAGAGGTGCTGGGATCCAAATCCTAGAAATAGACCATCTTTTTCTGATATAGTTATGGAGTTGGAGTCAATTTTGGAGGACAGAAAGGGTTCAGAAGGCATCAGTGTTCTACATCCTGATTTGCGTGGTCAACTTAGTGAGGCTAATGCAAATGTTTGTGTGTATCGTGAGGGAGTTAATTGGTCCTATCAGGGAGAACATATATCTCGAGAAGCTTCTGATGTAGCAAGGTGTGATGTGAGCATTTGGCTTGATACCTCGACTGATCATTTAGCATACTGTCCAATACTTTCTTGGGGATCCTTTGCCACCTGTGGGAGAAGGGAGACCATGGAGGACTCACATTTCCTTTTACCCTATATGTGCAAAGAAGAGGACATCCATGTCTTTGGGATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTAAAGCTATTCCTCGATTCTTGCTAACTTCATGTTCCCGAAGCAGTCCTGCTGATGCATTAGTAGAAGCATTTGTAAAAGTAGATATTGAATTTAGAAAAGAACTCGATTTCTTTCGTAAATCCAAGAAAGTTATACAGAAAGACTGGCATCCTGGTTGCACTGCGGTTGTAGCCCTAATTATTAGAAACAAGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATACTGTGTCGAGCTGGCCATCCAATTGTTTTGAGTAAAGATCACGTTGCAAGCTGCCTCGAGGAGAGAGAGCGTGTCATCAGTGCTGGTGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGTCCTGCTGCTCTTCAGGTTACTCGATCAATTGGTGACGATGATCTGAAGCCAGCTGTAACTGCAGAGCCTGAGATAACAGAGACTGTTTTGTCAGCTCAGGATGATTACATGGTCATGGCCAGTGATGGACTATGGGATGTCCTCAGCAACTCAGAGGTAATTGGCATAATCCGGGACACTGTCAAAGAACCGGGAATGTGCTCCAAGCGACTGGCAACAGAAGCGGCAGCTCGTGGAAGCAAAGATAACATCACGGTAATTGTTGTATTCTTGCATCCAGTATCTACAGCAGAGAGGATTTATTAG | 1989 | 43.34 | MFPKNSEMGLEIMEPNICIRGCCSSKSIPLHLQPSTFTLLSPIARGGESIVYEGRLDGKKVAVKKPILSTSEDLDKFHRELQLLCELDHPGIVKLVAANAKPPSYMFFFEFYESPNLAEKLHVEEWNPSIDQVLMITLQLATALQYLHNLGIAHRDVKAANVLLDKDLHPRLADFGLAVHHKNLKGISAENWKSSGKPTGGFYKKNMVGTLIYMAPEILRKDIHTEQSDVYSFGILINELLTGVVPYTDLRAEAQAHTVLEMNYTEQVLTAAIVSDGLRPALPGDESATPSSLLSLVQRCWDPNPRNRPSFSDIVMELESILEDRKGSEGISVLHPDLRGQLSEANANVCVYREGVNWSYQGEHISREASDVARCDVSIWLDTSTDHLAYCPILSWGSFATCGRRETMEDSHFLLPYMCKEEDIHVFGIFDGHRGAAAAEFSAKAIPRFLLTSCSRSSPADALVEAFVKVDIEFRKELDFFRKSKKVIQKDWHPGCTAVVALIIRNKLFVANAGDCRTILCRAGHPIVLSKDHVASCLEERERVISAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEITETVLSAQDDYMVMASDGLWDVLSNSEVIGIIRDTVKEPGMCSKRLATEAAARGSKDNITVIVVFLHPVSTAERIY | 662 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 35875538 | 35898949 | - | evm.model.ptg000007l.1262 | HCH9g1262 | 551894 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g1262 | 662 | SUPERFAMILY | PP2C-like | 389 | 654 | IPR036457 | - | |
HCH9g1262 | 662 | SMART | PP2C_4 | 385 | 650 | IPR001932 | - | |
HCH9g1262 | 662 | SUPERFAMILY | Protein kinase-like (PK-like) | 31 | 326 | IPR011009 | - | |
HCH9g1262 | 662 | ProSiteProfiles | Protein kinase domain profile. | 37 | 322 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH9g1262 | 662 | Gene3D | Transferase(Phosphotransferase) domain 1 | 24 | 339 | - | - | |
HCH9g1262 | 662 | SMART | PP2C_SIG_2 | 410 | 652 | IPR001932 | - | |
HCH9g1262 | 662 | CDD | PP2Cc | 397 | 652 | IPR001932 | - | |
HCH9g1262 | 662 | Pfam | Protein phosphatase 2C | 398 | 645 | IPR001932 | - | |
HCH9g1262 | 662 | FunFam | Leucine rich repeat protein phosphatase 2c domain containing protein | 386 | 656 | - | - | |
HCH9g1262 | 662 | PANTHER | PROTEIN PHOSPHATASE | 361 | 651 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
HCH9g1262 | 662 | Gene3D | - | 388 | 657 | IPR036457 | - | |
HCH9g1262 | 662 | ProSiteProfiles | PPM-type phosphatase domain profile. | 395 | 652 | IPR001932 | - | |
HCH9g1262 | 662 | SMART | serkin_6 | 37 | 321 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH9g1262 | 662 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 152 | 164 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH9g1262 | 662 | Pfam | Protein kinase domain | 40 | 315 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH6g0091 | HCH-Chr6:1159140 | HCH9g1262 | HCH-Chr9:35875538 | 9.90E-29 | dispersed | |
HCH6g1774 | HCH-Chr6:50127475 | HCH9g1262 | HCH-Chr9:35875538 | 3.50E-28 | dispersed | |
HCH7g0720 | HCH-Chr7:8945553 | HCH9g1262 | HCH-Chr9:35875538 | 6.80E-16 | dispersed | |
HCH9g0809 | HCH-Chr9:5595394 | HCH9g1262 | HCH-Chr9:35875538 | 1.80E-12 | dispersed | |
HCH9g1262 | HCH-Chr9:35875538 | HCH6g0622 | HCH-Chr6:37425742 | 7.90E-28 | dispersed | |
HCH9g1262 | HCH-Chr9:35875538 | HCH3g1454 | HCH-Chr3:52510969 | 1.90E-34 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81785 | PF00069 | Pkinase | 6.10E-47 | CL0016 | HCH | PK |
Pathway information
