Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1265 ATGGGAGGTATAGGATGTTTATGGCGTTTCCTTCAGAATGCAAAGCCTTACATAGCTGTAATCTCTCTCCAATTCGGCTACGCCGGCATGAACATCATCTCCACCGTTTCCCTCAATCGTGGATTTAGCCACTACGTGCTCGTCGTCTATCGGCATGCCTTTGCCACCGCCGCCATTGCTCCTTTCGCTCTGGTTCTCGAGAGGAAAGTGAGACCCAAGATTACGTTGAAGATTTTTATTCAACTATTTATTCTTGGTCTTCTTGGGCCAGTGATCGATCAGAACTTTTACTACGTCGGACTGAGAATGACATCGCCGACGTTCTCGTGCGCAATAAGCAACATGCTTCCGGCCATGACGTTCGTCATGGCAGTTCTTTGCAGGATGGAGATATTGAACATTAAAAAACTTAGATGCCAAGCCAAGATAGCAGGGACAGTACTAACGGTTTTTGGAGCGATGTTGATGACATTTTACAAAGGAAACGTCATAAAATTCTTCTGGACTGGGCATGGCCACCATGTCAATTCTTCTGCTCCTTCTTCAGCTACGATTGGGCAACATGATAAAGAATTCTTCATGGGTTCTATTTTGCTCATTATCGCCACTCTTGCATGGGCTGCCTTTTTCATTCTTCAGGTTATAACCATGAGGAAATACACAGCACCTCTTTCACTTACTGCCATAGTTTGCTTTCTTGGAACCATTCAGTCCATTGTTGTCACTTTGGTCATGGAACATAAAGCTTCTGCTTGGGCCATTGGTTGGGACATGAATCTTCTTGCCGCCGCTTATGCGGGAATTGTTGCATCATGCATTGCATATTATGTGCAAGGACTGGTGATGAAGACAAGAGGACCTGTTTTTGTAACAGCTTTCAGCCCTCTTCTGATGATTATTGTTGCCTTCATGGGCTCTTTCATCCTAGCTGAAAAGATTTATGTTGGAGGGATAATTGGAGCAGTACTTATTGTGATTGGGCTATACTCTGTTTTGTGGGGAAAGTACAAAGAACACAAAGAGAAGGAAACAGATGGAGATATTCTTGAACCAGTAAAGGGAAAAGAAGAAAATAGCAAATTGCCAGTCATAAACGAAGATATCGAAACAAAAGCCATCGATATCGAAACAATGCATAAGAATGAGGCTTTATCCATTAGTATTCGAAGCTCTCAGCCACCCATGGAAGCTTCAAAGCCTTAA 1203 43.23 MGGIGCLWRFLQNAKPYIAVISLQFGYAGMNIISTVSLNRGFSHYVLVVYRHAFATAAIAPFALVLERKVRPKITLKIFIQLFILGLLGPVIDQNFYYVGLRMTSPTFSCAISNMLPAMTFVMAVLCRMEILNIKKLRCQAKIAGTVLTVFGAMLMTFYKGNVIKFFWTGHGHHVNSSAPSSATIGQHDKEFFMGSILLIIATLAWAAFFILQVITMRKYTAPLSLTAIVCFLGTIQSIVVTLVMEHKASAWAIGWDMNLLAAAYAGIVASCIAYYVQGLVMKTRGPVFVTAFSPLLMIIVAFMGSFILAEKIYVGGIIGAVLIVIGLYSVLWGKYKEHKEKETDGDILEPVKGKEENSKLPVINEDIETKAIDIETMHKNEALSISIRSSQPPMEASKP 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36718999 36721159 - evm.model.ptg000007l.1265 HCH9g1265 551897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1265 400 Pfam EamA-like transporter family 194 332 IPR000620 GO:0016020(InterPro)
HCH9g1265 400 Pfam EamA-like transporter family 18 157 IPR000620 GO:0016020(InterPro)
HCH9g1265 400 PANTHER WAT1-RELATED PROTEIN 18 344 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH9g1265 400 SUPERFAMILY Multidrug resistance efflux transporter EmrE 256 337 - -
HCH9g1265 400 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0032 HCH-Chr8:1159736 HCH9g1265 HCH-Chr9:36718999 6.90E-69 dispersed
HCH1g0598 HCH-Chr1:54870536 HCH9g1265 HCH-Chr9:36718999 4.30E-130 transposed
HCH9g0974 HCH-Chr9:7272502 HCH9g1265 HCH-Chr9:36718999 3.10E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1265 - - - 0.0