Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1278 ATGAGAGAAGAGGACTCGAATTGGTTTTCAAAGTGGGAGGAAGAGCTACCACCACCTGAGGATTTGATGCCTCTCTCCCAAAGCCTAATCACTCCTGATCTTGCTTTAGCGTTTGATATCGGAAACCCATGTAATAACAATAATATTAGCAACAACAATCCACAAGCTCCGGCACCGGCACCGGCACCTCCTCCTCCAACTGATTTCGGGGACTCCGGTGACTTAGGTTCTGGCGGCGCTGTCGGTGATGAACCGGCACGCACTCTTAAGCGCCCTCGGCTTGTTTGGACTCCACAGCTCCACAAACGTTTTGTTGATGCTGTTGCTCACTTGGGAATTAAGAATGCTGTGCCCAAGACTATAATGCAGCTGATGAGTGTTGATGGATTGACTAGAGAAAACGTAGCTAGTCATTTGCAGAAGTACCGTCTCTATTTGAAGCGTATGCAGGGACTATCTGGTGGCAGTGGAGGCGGCGGAAGTGGTGGTGGTGGGGTTTTAGCTGCAGCTTCAGATCCTGCCACTGATCATTTGTTTGCGAGCTCTCCGGTGCCACCGCATTTTTTGCACCATGGTCGAGCCAATTCAGACCATTTCTTGCCATACGTTCCCATGGCTGCACTACAGCACCATCATCATCATCAGCAGCAAATAGCGGCAGCAGCGGCCGCGGCTGTGGCTGCACATCCACAGTATCATAGACAAATTGGCAACCATTTCGGGTCATCTCCAAATGGGCAATTCGAGCATCCGTTTTTGGCTAGGCAATCGCAGCAGCCCGTTCATAGGATTGGGGCATCGATGCATAATCCAATGACGAGTTATGTGGACTTAGATTCATCTAATGGAACAGGAGGAAAGAAGGTTCTAACGCTTTTCCCAACTGGGGATGATTAA 897 49.72 MREEDSNWFSKWEEELPPPEDLMPLSQSLITPDLALAFDIGNPCNNNNISNNNPQAPAPAPAPPPPTDFGDSGDLGSGGAVGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGSGGGGSGGGGVLAAASDPATDHLFASSPVPPHFLHHGRANSDHFLPYVPMAALQHHHHHQQQIAAAAAAAVAAHPQYHRQIGNHFGSSPNGQFEHPFLARQSQQPVHRIGASMHNPMTSYVDLDSSNGTGGKKVLTLFPTGDD 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38492933 38493829 + evm.model.ptg000007l.1278 HCH9g1278 551910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1278 298 NCBIfam myb-like DNA-binding domain, SHAQKYF class 92 144 IPR006447 GO:0003677(InterPro)
HCH9g1278 298 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 265 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1278 298 MobiDBLite consensus disorder prediction 41 86 - -
HCH9g1278 298 FunFam Two-component response regulator 87 150 - -
HCH9g1278 298 Gene3D - 88 150 - -
HCH9g1278 298 MobiDBLite consensus disorder prediction 1 18 - -
HCH9g1278 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 147 IPR017930 -
HCH9g1278 298 MobiDBLite consensus disorder prediction 41 55 - -
HCH9g1278 298 SUPERFAMILY Homeodomain-like 88 148 IPR009057 -
HCH9g1278 298 MobiDBLite consensus disorder prediction 1 25 - -
HCH9g1278 298 Pfam Myb-like DNA-binding domain 94 143 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0976 HCH-Chr9:7294860 HCH9g1278 HCH-Chr9:38492933 2.60E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34197 PF00249 Myb_DNA-binding 2.20E-08 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1278 - - - 0.0