Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1278 ATGAGAGAAGAGGACTCGAATTGGTTTTCAAAGTGGGAGGAAGAGCTACCACCACCTGAGGATTTGATGCCTCTCTCCCAAAGCCTAATCACTCCTGATCTTGCTTTAGCGTTTGATATCGGAAACCCATGTAATAACAATAATATTAGCAACAACAATCCACAAGCTCCGGCACCGGCACCGGCACCTCCTCCTCCAACTGATTTCGGGGACTCCGGTGACTTAGGTTCTGGCGGCGCTGTCGGTGATGAACCGGCACGCACTCTTAAGCGCCCTCGGCTTGTTTGGACTCCACAGCTCCACAAACGTTTTGTTGATGCTGTTGCTCACTTGGGAATTAAGAATGCTGTGCCCAAGACTATAATGCAGCTGATGAGTGTTGATGGATTGACTAGAGAAAACGTAGCTAGTCATTTGCAGAAGTACCGTCTCTATTTGAAGCGTATGCAGGGACTATCTGGTGGCAGTGGAGGCGGCGGAAGTGGTGGTGGTGGGGTTTTAGCTGCAGCTTCAGATCCTGCCACTGATCATTTGTTTGCGAGCTCTCCGGTGCCACCGCATTTTTTGCACCATGGTCGAGCCAATTCAGACCATTTCTTGCCATACGTTCCCATGGCTGCACTACAGCACCATCATCATCATCAGCAGCAAATAGCGGCAGCAGCGGCCGCGGCTGTGGCTGCACATCCACAGTATCATAGACAAATTGGCAACCATTTCGGGTCATCTCCAAATGGGCAATTCGAGCATCCGTTTTTGGCTAGGCAATCGCAGCAGCCCGTTCATAGGATTGGGGCATCGATGCATAATCCAATGACGAGTTATGTGGACTTAGATTCATCTAATGGAACAGGAGGAAAGAAGGTTCTAACGCTTTTCCCAACTGGGGATGATTAA 897 49.72 MREEDSNWFSKWEEELPPPEDLMPLSQSLITPDLALAFDIGNPCNNNNISNNNPQAPAPAPAPPPPTDFGDSGDLGSGGAVGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGSGGGGSGGGGVLAAASDPATDHLFASSPVPPHFLHHGRANSDHFLPYVPMAALQHHHHHQQQIAAAAAAAVAAHPQYHRQIGNHFGSSPNGQFEHPFLARQSQQPVHRIGASMHNPMTSYVDLDSSNGTGGKKVLTLFPTGDD 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38492933 38493829 + evm.model.ptg000007l.1278 HCH9g1278 551910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1278 298 NCBIfam myb-like DNA-binding domain, SHAQKYF class 92 144 IPR006447 GO:0003677(InterPro)
HCH9g1278 298 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 265 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1278 298 MobiDBLite consensus disorder prediction 41 86 - -
HCH9g1278 298 FunFam Two-component response regulator 87 150 - -
HCH9g1278 298 Gene3D - 88 150 - -
HCH9g1278 298 MobiDBLite consensus disorder prediction 1 18 - -
HCH9g1278 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 147 IPR017930 -
HCH9g1278 298 MobiDBLite consensus disorder prediction 41 55 - -
HCH9g1278 298 SUPERFAMILY Homeodomain-like 88 148 IPR009057 -
HCH9g1278 298 MobiDBLite consensus disorder prediction 1 25 - -
HCH9g1278 298 Pfam Myb-like DNA-binding domain 94 143 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1278 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g0976 HCH-Chr9:7294860 HCH9g1278 HCH-Chr9:38492933 2.60E-111 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH5g0246 . 176 377 G2-like Transcription Factor Family AT5G16560 51.2 9.4e-40 161.4
HCH4g0682 . 1 183 G2-like Transcription Factor Family AT5G42630 59.5 8.3e-46 180.6
HCH12g0669 . 12 175 G2-like Transcription Factor Family AT5G42630 60.2 1.4e-40 163.3
HCH8g0792 . 3 339 G2-like Transcription Factor Family AT2G03500 50.4 6.0e-77 285.0
HCH1g0801 . 1 259 G2-like Transcription Factor Family AT1G25550 53.7 3.3e-52 202.2
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT1G25550 54.6 8.1e-51 197.6
HCH1g0801 . 19 269 G2-like Transcription Factor Family AT3G25790 50.2 2.6e-43 172.6
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT3G25790 51.3 6.0e-40 161.4
HCH3g1389 . 1 263 G2-like Transcription Factor Family AT3G46640 52.0 5.4e-54 208.4
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT5G05090 55.6 3.6e-72 268.5
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT5G05090 55.5 3.7e-69 258.5
HCH7g1427 . 13 309 G2-like Transcription Factor Family AT4G13640 53.3 4.6e-52 201.8
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH4g0893 . 6 230 G2-like Transcription Factor Family AT1G69580 55.9 2.0e-51 199.9
HCH7g0014 . 1 385 G2-like Transcription Factor Family AT1G79430 53.4 7.2e-84 307.8
HCH2g0956 . 1 363 G2-like Transcription Factor Family AT1G79430 56.3 4.7e-83 305.1
HCH7g1427 . 38 197 G2-like Transcription Factor Family AT1G79430 61.4 2.3e-37 153.3
HCH14g0730 . 54 292 G2-like Transcription Factor Family AT2G01060 60.9 2.1e-55 212.6
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT3G10760 61.3 2.2e-90 329.3
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT3G10760 61.3 1.6e-85 313.2
HCH9g0976 . 1 201 G2-like Transcription Factor Family AT2G40970 61.6 7.8e-61 230.7
HCH9g1278 . 1 201 G2-like Transcription Factor Family AT2G40970 58.3 4.3e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34197 PF00249 Myb_DNA-binding 2.20E-08 CL0123 HCH TF