Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1291 ATGCCTTCAAAGACCAAGAAACACTCAAAAACGCCGTCTAAATTATCATCAAACTCAGACAACTCTCATTCTCCAGTGACACCTCCTCCTCATGCTGCTGCTGCTGTTGCTGCTGAAGATGATTTTCGTTCCTATCTTGAAGAAGCTTCAATTAAATATCCTTCTTTTATTGATACCTCCGCTTTCATTGGTCAAGTTACTAATTCTCAAGTCCAGTCTACTGGTTGTAAACTTTGGCTTTCTGAATCTTCAATGCTTTCCTCTAACTTCACCCAAGGGTCTATCGTCTCGGTGGCATTGTCTTCTAAGAGAGGGAATGTTTCAGATGGATTTCCTCTCTCCTCATTAGCTGATGAATATGGTAGACGATTTGGGGTTGATTGTGGATATTCATTAACTAATGAAGCGGGGAAGTACTTTGCTCTTGCGAGAATTTTTTCTTCTAGTAAGGAATCAAAGAATGGAGTTCAATTATCAACAAGCCTTTCATATACATTAGGTTGCCCTACATTAGGCTGTGTTGTTTTTATCTTCCCTTTAAAACATCATTTTTGTGATGGTTTGTTAAATGAGAATGGAAAATTAAAGAGCACAAAAGTAGATTCTCTTGAAATAAACTATTGTAAGGAACTTTTCCTGGAGTTGATTTCTTCTACCAATATATTAATGAGAAATAGTGATGTGTCCTCTTCCTCCACTATTGGTTCAGAAAAGGTTCGTGGTCGTGGTGAAAATGGTAATTTAGCATCTCCAAGAACTCCCTTTTATCAATCAAAGCTAAGTCCTCTTTCTTCTAAGCTATCCGCTTCACCAAATTGTGATGACTCAGTATCAAGTTTAGCAAATGTAGATAGTTCATCTTCACACTCACTTATTATAGACGCATTAGGAGACAATAGTGTTAGAAAACTAGTACAAACCATTGCTTCCAATGAATTAAATTCACGTTGTTTACTCCTTGGAAATCTTATTACTCTACCAGTGCTTTCGGATTTTTGTACTTTCTTGGTTAGGGGTGGGAAAGGATTGTTAGTAGATGGTGACTCTCATGATTCTACTGAAAGTAGCAATCATTCTCAATCTTATGTGTCAGACGAATATGGGAATTGTGCTTTCACTATAGACCAGCGGACAAAAGTATTTATAAATGTTCAACCAACCAAGGTTTCGAAGACGACACAAAAGAGAGTTCTATTAGATGTGAAACTTGAAAATCTAAATACTAGAGCTAAAGTAGAATGTGAAGTTTTGAAATTAGGTGGACTTTCTAAAGAATATTCAATTTTGAAGGACATTATAATTGGCTGTTCGTTAAAAGGCACCTTATCAAGTCTTGGTTTACGAACTACGAAGGGATTGCTTCTTCATGGCCCACCTGGAACAGGAAAAACTTCTTTGGCTCAATTATGTGCTCATGATGCTGGTGTCAACTTATCCTATTTGAACGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAAAAGGCTTTGCATGAAGTTTTTGAGGCAGCAAGCCAAGTTGCACCTTCTGTGATATTCATTGATGAGTTAGATGCTATTGCACCTGCCAGGAAAGATGGTGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACATTGCTTAATCTGATGGATGGGATCAGTCGAAGTGATGGGCCACTAATAATTGCTTCTACCAACAGGCCTGATAGCATTGAACCTGCACTAAGGCGGCCTGGGAGACTTGACAAGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGCTTGGATATTCTACTTACTATTCTTAGTGAAATGGAACATTCTCTTTCAGATTTGCAAGTTCAACATCTTGCCATGGTTACACATGGTTTTGTTGGCGCTGATTTGGCTTCCCTTTGCAATGAGGCGGCTTTAAATTGTATTAGGCGTTATCATGAGTCTAAAAAGTCTATAGAATGTTTAAGTTTTGGTAGATCAATTGTAGCGGGTGAAGATTCTTCTGATGACACTATTGAAGAGCCTGTTTTTTTAAAAGACATTAGCCATATCTCAGGGGATTGCTCTAGTTCTGCAACTTCAGCAATCTTTGGATTTTCTGTTTCATCCGAGGCTCTAACATCTGTGTCCTTGAATGAAGTGGTAGATGATAATGAAGAGATTTATAGCCCTGCCAAAATCAACGGTAGATTGAAGGTTGTTTTTGAAGATTTTGAGATGGCTAGAATAAAAGTGAGGCCTAGTGCCATGCGGGAGGTCATACTTGAAGTTCCCAAGGTAAAATGGGAAGACGTTGGTGGCCAAAGAGAGGTTAAGACTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAATATCAGGATGCATTCAAGCGTATAGGGACTCGACCTCCGACAGGAGTCTTGATGTTTGGCCCTCCTGGTTGCAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTTCTTGCAGTCAAGGGTCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCTGTTAGATCTCTATTTGCTAAGGCAAGAGCTAATGCTCCATCAATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTTTCTGTTTCTGATAGAGTTATGAGTCAGCTTCTGGTTGAGTTGGATGGTTTACATCAAAGAGTTGGTATTACTGTCATTGCCGCTACCAATCGACCGGATAAGATTGATCCAGCCCTTCTAAGACCAGGACGTTTTGACCGGCTGATATATGTTGGGCCACCAAATGAATCTGATCGGGAAGAGATATTCCGCATCCATTTGCGCAGAATTCCTTACAGCCCAGATATCAGTATAAGGAAGCTGGCTTCTCTTACTCAAGGCTATACAGGGGCAGACATATCATTAATCTGTAGAGAAGCAGCTTTATCTGCTCTAGAGGAGAGCCTTGAGGCTTCAGAAATAAATATGCAACATTTAGAAACTGCAATTAGACATGTGAAGCCATCGGAAACTGAAGCTTATCAAGAGTTATCAGACAGGTTTCAAAGGCTTGTTCGTTCTACTTCTAGCTCACAAGGAGCTGAAGTTGGGTATCAACAATGTGCAAAAGAATCTAACCAGTTTTCTATTCAGGATGTGAGGGCAATGGAAAGAGATCGAGGTGCTCGAACAAGACGATCACTGGAGCTTTCCACCAGAAGTCTTTTATTCACTCTTGCAATAACATGCATTGCTGTTTTTTTAGGATTCCTATTTTTCCCAAAAAGTGAGAGAACGTTTACATCAATGGTAGGTGAGCTCATAAGATCTAGAGAGTAG 3318 39.75 MPSKTKKHSKTPSKLSSNSDNSHSPVTPPPHAAAAVAAEDDFRSYLEEASIKYPSFIDTSAFIGQVTNSQVQSTGCKLWLSESSMLSSNFTQGSIVSVALSSKRGNVSDGFPLSSLADEYGRRFGVDCGYSLTNEAGKYFALARIFSSSKESKNGVQLSTSLSYTLGCPTLGCVVFIFPLKHHFCDGLLNENGKLKSTKVDSLEINYCKELFLELISSTNILMRNSDVSSSSTIGSEKVRGRGENGNLASPRTPFYQSKLSPLSSKLSASPNCDDSVSSLANVDSSSSHSLIIDALGDNSVRKLVQTIASNELNSRCLLLGNLITLPVLSDFCTFLVRGGKGLLVDGDSHDSTESSNHSQSYVSDEYGNCAFTIDQRTKVFINVQPTKVSKTTQKRVLLDVKLENLNTRAKVECEVLKLGGLSKEYSILKDIIIGCSLKGTLSSLGLRTTKGLLLHGPPGTGKTSLAQLCAHDAGVNLSYLNGPEIISQYHGESEKALHEVFEAASQVAPSVIFIDELDAIAPARKDGGEELSQRIVATLLNLMDGISRSDGPLIIASTNRPDSIEPALRRPGRLDKEIEIGVPSPNQRLDILLTILSEMEHSLSDLQVQHLAMVTHGFVGADLASLCNEAALNCIRRYHESKKSIECLSFGRSIVAGEDSSDDTIEEPVFLKDISHISGDCSSSATSAIFGFSVSSEALTSVSLNEVVDDNEEIYSPAKINGRLKVVFEDFEMARIKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKYQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGITVIAATNRPDKIDPALLRPGRFDRLIYVGPPNESDREEIFRIHLRRIPYSPDISIRKLASLTQGYTGADISLICREAALSALEESLEASEINMQHLETAIRHVKPSETEAYQELSDRFQRLVRSTSSSQGAEVGYQQCAKESNQFSIQDVRAMERDRGARTRRSLELSTRSLLFTLAITCIAVFLGFLFFPKSERTFTSMVGELIRSRE 1105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39800558 39821335 - evm.model.ptg000007l.1291 HCH9g1291 551923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1291 1105 ProSitePatterns AAA-protein family signature. 896 914 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH9g1291 1105 SMART AAA_5 449 585 IPR003593 GO:0016887(InterPro)
HCH9g1291 1105 SMART AAA_5 790 928 IPR003593 GO:0016887(InterPro)
HCH9g1291 1105 CDD RecA-like_CDC48_r2-like 765 924 - -
HCH9g1291 1105 FunFam calmodulin-interacting protein 111 isoform X1 751 926 - -
HCH9g1291 1105 Gene3D - 583 704 - -
HCH9g1291 1105 MobiDBLite consensus disorder prediction 12 26 - -
HCH9g1291 1105 Pfam ATPase family associated with various cellular activities (AAA) 453 582 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH9g1291 1105 Pfam ATPase family associated with various cellular activities (AAA) 794 925 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH9g1291 1105 FunFam Putative vesicular transport protein (CDC48) 403 582 - -
HCH9g1291 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 752 1012 IPR027417 -
HCH9g1291 1105 MobiDBLite consensus disorder prediction 230 251 - -
HCH9g1291 1105 Gene3D - 751 1003 IPR027417 -
HCH9g1291 1105 Gene3D - 927 997 - -
HCH9g1291 1105 PANTHER AAA-FAMILY ATPASE 76 1014 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
HCH9g1291 1105 FunFam spermatogenesis-associated protein 5-like protein 1 927 1011 - -
HCH9g1291 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 643 IPR027417 -
HCH9g1291 1105 Coils Coil 975 995 - -
HCH9g1291 1105 Gene3D - 399 582 IPR027417 -
HCH9g1291 1105 MobiDBLite consensus disorder prediction 1 31 - -
HCH9g1291 1105 Pfam AAA+ lid domain 606 642 IPR041569 -
HCH9g1291 1105 Pfam AAA+ lid domain 948 993 IPR041569 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0267 HCH-Chr14:30652896 HCH9g1291 HCH-Chr9:39800558 0.00E+00 dispersed
HCH7g1562 HCH-Chr7:48055626 HCH9g1291 HCH-Chr9:39800558 5.50E-42 dispersed
HCH8g1402 HCH-Chr8:48711307 HCH9g1291 HCH-Chr9:39800558 8.30E-120 dispersed
HCH9g0682 HCH-Chr9:4553461 HCH9g1291 HCH-Chr9:39800558 5.00E-32 dispersed
HCH9g1291 HCH-Chr9:39800558 HCH9g0568 HCH-Chr9:3732070 1.00E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1291 - - - 0.0