Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1299 ATGCAGCCCGATCAAACTTCAGAGCTTTACAGGTTCCTAGCCCAGAACGGAGCCTTCAACGCCACCGCCACCTCTGCCTCCTACGGTTTTCCGGCGGCCCAGAGCTTCTCCAGCTCTTCCTCTTACTACCCTTTGGAGTCGGCCGGAATTACTGAGCCGCCACTGCCATCACCACATGATAGAGCTGTGGCTGCTCTCAAGAATCACAAGGAAGCTGAAAAAAGGAGAAGGGAGAGAATTAACTCTCATCTCGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACCGACAAAGCTTCCCTTCTTGCAAAAGTTGTTCAACGTGTGAAAGAGCTAAAACATCAGACCTTAGACATTGCTGAGCTCGAGACCTTCCCTTCCGAAACCGATGAGATCACCGTACTCTCCAGCGATCAATCAACCGATGGACAGCTGCTGTTTAAAGCCTCATTGTGCTGCGAGGATCGATCCGATCTCATCCCCGACCTGATGGAAATACTGAATTCTCTCCACCTCAAGACCTTGAGAGCAGAGATTGTCACCATTGGCGGAAGAATTCAGAATGTTTTGGTTATCGCCGCCAACGACAAACACAGTGTTGAGTCAGTCCATTTTCTGCAAAACGCATTGAAATCTTTGCTGGAACGATCGAATTCGAGTGAGAGATCCAAGAGGAGGCGTGTACTGGATCATAAAAGTACGATACTCTAA 714 48.46 MQPDQTSELYRFLAQNGAFNATATSASYGFPAAQSFSSSSSYYPLESAGITEPPLPSPHDRAVAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVKELKHQTLDIAELETFPSETDEITVLSSDQSTDGQLLFKASLCCEDRSDLIPDLMEILNSLHLKTLRAEIVTIGGRIQNVLVIAANDKHSVESVHFLQNALKSLLERSNSSERSKRRRVLDHKSTIL 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40808004 40811089 + evm.model.ptg000007l.1299 HCH9g1299 551931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1299 237 PANTHER TRANSCRIPTION FACTOR BHLH30 35 232 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1299 237 Pfam Helix-loop-helix DNA-binding domain 68 114 IPR011598 GO:0046983(InterPro)
HCH9g1299 237 SMART finulus 70 119 IPR011598 GO:0046983(InterPro)
HCH9g1299 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983(InterPro)
HCH9g1299 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 117 IPR036638 GO:0046983(InterPro)
HCH9g1299 237 FunFam transcription factor bHLH30 59 122 - -
HCH9g1299 237 Gene3D - 60 122 IPR036638 GO:0046983(InterPro)
HCH9g1299 237 CDD bHLH_AtAIG1_like 60 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1237 HCH-Chr10:44052016 HCH9g1299 HCH-Chr9:40808004 1.50E-40 dispersed
HCH1g0806 HCH-Chr1:56753004 HCH9g1299 HCH-Chr9:40808004 8.00E-41 dispersed
HCH2g0860 HCH-Chr2:52214647 HCH9g1299 HCH-Chr9:40808004 9.70E-30 dispersed
HCH3g0695 HCH-Chr3:4945067 HCH9g1299 HCH-Chr9:40808004 2.90E-34 dispersed
HCH4g0279 HCH-Chr4:1798397 HCH9g1299 HCH-Chr9:40808004 4.30E-26 dispersed
HCH9g0991 HCH-Chr9:7566985 HCH9g1299 HCH-Chr9:40808004 1.70E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34200 PF00010 HLH 1.10E-11 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1299 - - - 0.0