Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1306 ATGGGTAAGAACGAATTTTTAACACCGAAAGCAATTGCAAACAGAATCAAGGCGAAGGGGCTCCAAAAGCTGAGATGGTATTGCCAGATGTGCCAGAAGCAGTGTCGGGACGAGAATGGCTTCAAATGCCATTGTATGAGCGAAAGCCATCAACGCCAAATGCAGATCTTTGGCCAAAATCCACACCGCATCGTCGAAGGTCATACTGAAGAATTCAAGAGAACTTTCATGGAACATATGAAACGCAGCCACAGGTTCAGTCGCGTGGCGCCTACAGTCGTCTACAACGAATACATTAATGACAGACATCATGTTCATATGAATTCAACTGAGTGGGCTACTCTCACTGAGTTTGTTAAACATCTGGGTCGAACGGGTCAGTGTAAGGTGGAGGATACTCCCAAGGGTTGGTTTATTACTTATATAGATAGAGATTCAGAAACTCTTTTCAAAGAAAAAATGAAAAATAAGAGGATTCGCGCAGATTTAGCTGAAGAAGAGAAGCAGGAGAGAGAGATAAAAAAGCAAATTGAGAGGGCCGAGCAATTAGTTCCATTGGCTTCTGTATCTGCTGATCCTTTGGAGACGGATCAAACGAAAGAGTTCAAAATGGAGAGTGGGGTTAAGGTAGGGTTTGCTTTGGGATCATCATCAAAACTAAAAGAAAAAGGAGAAAGTTCCAAACTGGTTTTTGATGAGGATGAGACAGATTGGAGGGCAAGGGACAAACTTGGTGAGAATTCAAGAAAAAAGATAGGTGGTGGTGGCGGTCTGTCAACTTTTGAGGCATTGATGAGAGAAGAAGAGATAAAGAAGGAGAAGCTTAATAGGAAGGATTATTGGTTGTGTGAGGGAATAATTGTAAAGGTCATAAGTGAGGATTTGGCTGATAAGGGTTACTATAAACAGAAGGGAGTTGTGAGGAAAGTGATCGATAAATATGTTGGTGAGATAGAAATGTTGTATGGAAAGTATGTTTTGAGAGTTGATCAGGAAGAACTGGAGACAGTGATCCCCCAAATTGGTGGTTTGGTGAGGATAGTAAATGGGGTGTACCGTGGATCAAATGCTAGATTGTTGGCGGTTGACACAGGTAAGTTTTGCTCTAAGGTGCAGATAGAGAAGGGTGTGTATGATGGTAGGGTGCTGAATGCTGTTGTATATGAAGATATTTGTAAAGTTGCCTCATGA 1191 41.9 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGHTEEFKRTFMEHMKRSHRFSRVAPTVVYNEYINDRHHVHMNSTEWATLTEFVKHLGRTGQCKVEDTPKGWFITYIDRDSETLFKEKMKNKRIRADLAEEEKQEREIKKQIERAEQLVPLASVSADPLETDQTKEFKMESGVKVGFALGSSSKLKEKGESSKLVFDEDETDWRARDKLGENSRKKIGGGGGLSTFEALMREEEIKKEKLNRKDYWLCEGIIVKVISEDLADKGYYKQKGVVRKVIDKYVGEIEMLYGKYVLRVDQEELETVIPQIGGLVRIVNGVYRGSNARLLAVDTGKFCSKVQIEKGVYDGRVLNAVVYEDICKVAS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41680361 41681551 - evm.model.ptg000007l.1306 HCH9g1306 551938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1306 396 SMART Kin17_mid_2 52 178 IPR019447 -
HCH9g1306 396 CDD KOW_KIN17 341 394 IPR041995 -
HCH9g1306 396 Gene3D - 60 159 IPR038254 -
HCH9g1306 396 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 395 IPR037321 GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0006260(PANTHER)|GO:0006974(PANTHER)
HCH9g1306 396 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
HCH9g1306 396 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
HCH9g1306 396 Coils Coil 258 278 - -
HCH9g1306 396 Pfam KN17 SH3-like C-terminal domain 277 330 IPR041330 -
HCH9g1306 396 Gene3D - 339 395 IPR014722 -
HCH9g1306 396 FunFam DNA/RNA-binding protein KIN17, putative 339 395 - -
HCH9g1306 396 Coils Coil 154 183 - -
HCH9g1306 396 Gene3D - 285 338 - -
HCH9g1306 396 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH9g1306 HCH-Chr9:41680361 HCH9g1307 HCH-Chr9:41840488 5.30E-205 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1306 K13102 - csv:101216499 677.937