Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1309 ATGGGTAGTAGAAGTAGAACAGTGAAGGTTGGTGCTGATGACATAAATAAAGTAGTAGTGAACGGGATGCCTAGCTTTGTTTCTCCTATGCCTGCTTCCAATCCCATTGGAGAGGGAAGCTCTATTCCTTCATCTCGAATCTCGGACTTTAGAACACTTGAGCAATCTCTTGGATTTCAGCTAGAGGATGTAGACCTTACTAGAAATCCTCTATATAATCAGATAAAGTCAAATAGTACAACTTTGAACAGCAATATCCAATTTGGTCCTTTTCAAATTAAGCCACTTGCTTCCTCTGATATAAATCTGCCAGCTGCTATCATGGGGTCTCAGACATTGCAATTGCAGAAAGAAACACATCCAAACTTGGTTTCTACATCTAGTGGTCCTCGTGAAAACTGGGGGGAGTCTATCGAGGCAGATGGCAGTCCAAGAACTGATACCTCCACAGATGACACAGATGACAAAAGTCAAAGGCATGAGAGGGATCAAGTAAATTCACTTGGGGCATATGATTCGAGCAACAAATCAAAAGAAAAATCATCTGATCAGAAGACCTTACGGAGGCTTGCCCAAAATCGTGAAGCTGCCAGAAAAAGCCGTTTAAGAAAAAAAGCATATGTGCAGCAGCTTGAAAGTAGTCGGCTGAAGCTTACTCAGCTTGAGCAAGAGCTCCAGCGAGCCCGTCAGCAGGGCATATTTATTTCAAGCTCTGGAGACCAAGCTCATTCGATGAGTGGAAATGGGGCCCTAGCATTTGATGTAGAATATTCGCGTTGGTTAGAGGAGCATAATAGGCAGATAAATGAACTTAGAGCTGCAGTTAATTCACATGCGGGTGACACTGAACTTCGAACTATTGTTGATAGTGTGACTGCCCAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGCATGTGGAAGACACCAGCAGAGCGGTGTTTCTTGTGGATTGGTGGCTTCCGGTCATCTGAGCTCCTGAAGCTTCTTGTAAATCAATTGGAGCCTCTGACTGAGCAGCAATTGATGGGCATCTGCAACCTGCAACAATCATCACAACAGGCTGAAGATGCTCTCTCACAAGGGATGGATGCATTGCAGCAATCATTGGCTGAAACATTGGCTAGTGGTTCTCCTGGAACATCAGGATCATCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCTATGGGAAAGCTAGGAACTCTTGAAGGCTTCCTGCGCCAGGCTGATAATCTACGGCAACAGACACTCCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCCCTTCTTGCAATAAATGATTATTTTTCCCGCCTTCGAGCCCTGAGTTCTCTCTGGCTTGCACGGCCGCGAGAGTAA 1413 45.08 MGSRSRTVKVGADDINKVVVNGMPSFVSPMPASNPIGEGSSIPSSRISDFRTLEQSLGFQLEDVDLTRNPLYNQIKSNSTTLNSNIQFGPFQIKPLASSDINLPAAIMGSQTLQLQKETHPNLVSTSSGPRENWGESIEADGSPRTDTSTDDTDDKSQRHERDQVNSLGAYDSSNKSKEKSSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRQINELRAAVNSHAGDTELRTIVDSVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSELLKLLVNQLEPLTEQQLMGICNLQQSSQQAEDALSQGMDALQQSLAETLASGSPGTSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41872209 41879729 - evm.model.ptg000007l.1309 HCH9g1309 551941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1309 470 SMART brlzneu 181 244 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1309 470 Pfam bZIP transcription factor 185 225 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1309 470 MobiDBLite consensus disorder prediction 176 197 - -
HCH9g1309 470 Gene3D - 184 235 - -
HCH9g1309 470 Coils Coil 261 281 - -
HCH9g1309 470 Coils Coil 204 231 - -
HCH9g1309 470 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1309 470 MobiDBLite consensus disorder prediction 118 133 - -
HCH9g1309 470 FunFam BZIP family transcription factor 184 233 - -
HCH9g1309 470 PANTHER TRANSCRIPTION FACTOR TGA9 147 470 - -
HCH9g1309 470 SUPERFAMILY Leucine zipper domain 185 228 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1309 470 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1309 470 ProSiteProfiles DOG1 domain profile. 250 467 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH9g1309 470 MobiDBLite consensus disorder prediction 118 203 - -
HCH9g1309 470 MobiDBLite consensus disorder prediction 145 166 - -
HCH9g1309 470 CDD bZIP_HBP1b-like 185 237 - -
HCH9g1309 470 Pfam Seed dormancy control 267 342 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1252 HCH-Chr10:44442516 HCH9g1309 HCH-Chr9:41872209 9.80E-121 dispersed
HCH13g1272 HCH-Chr13:40631032 HCH9g1309 HCH-Chr9:41872209 1.10E-74 dispersed
HCH1g0618 HCH-Chr1:55122479 HCH9g1309 HCH-Chr9:41872209 1.20E-136 dispersed
HCH3g1129 HCH-Chr3:34951690 HCH9g1309 HCH-Chr9:41872209 3.10E-93 dispersed
HCH9g1135 HCH-Chr9:14851883 HCH9g1309 HCH-Chr9:41872209 5.40E-84 dispersed
HCH9g1309 HCH-Chr9:41872209 HCH4g0180 HCH-Chr4:1035219 4.60E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34201 PF14144 DOG1 4.60E-30 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1309 K14431 - csv:101219149 765.377