Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g1309 | ATGGGTAGTAGAAGTAGAACAGTGAAGGTTGGTGCTGATGACATAAATAAAGTAGTAGTGAACGGGATGCCTAGCTTTGTTTCTCCTATGCCTGCTTCCAATCCCATTGGAGAGGGAAGCTCTATTCCTTCATCTCGAATCTCGGACTTTAGAACACTTGAGCAATCTCTTGGATTTCAGCTAGAGGATGTAGACCTTACTAGAAATCCTCTATATAATCAGATAAAGTCAAATAGTACAACTTTGAACAGCAATATCCAATTTGGTCCTTTTCAAATTAAGCCACTTGCTTCCTCTGATATAAATCTGCCAGCTGCTATCATGGGGTCTCAGACATTGCAATTGCAGAAAGAAACACATCCAAACTTGGTTTCTACATCTAGTGGTCCTCGTGAAAACTGGGGGGAGTCTATCGAGGCAGATGGCAGTCCAAGAACTGATACCTCCACAGATGACACAGATGACAAAAGTCAAAGGCATGAGAGGGATCAAGTAAATTCACTTGGGGCATATGATTCGAGCAACAAATCAAAAGAAAAATCATCTGATCAGAAGACCTTACGGAGGCTTGCCCAAAATCGTGAAGCTGCCAGAAAAAGCCGTTTAAGAAAAAAAGCATATGTGCAGCAGCTTGAAAGTAGTCGGCTGAAGCTTACTCAGCTTGAGCAAGAGCTCCAGCGAGCCCGTCAGCAGGGCATATTTATTTCAAGCTCTGGAGACCAAGCTCATTCGATGAGTGGAAATGGGGCCCTAGCATTTGATGTAGAATATTCGCGTTGGTTAGAGGAGCATAATAGGCAGATAAATGAACTTAGAGCTGCAGTTAATTCACATGCGGGTGACACTGAACTTCGAACTATTGTTGATAGTGTGACTGCCCAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGCATGTGGAAGACACCAGCAGAGCGGTGTTTCTTGTGGATTGGTGGCTTCCGGTCATCTGAGCTCCTGAAGCTTCTTGTAAATCAATTGGAGCCTCTGACTGAGCAGCAATTGATGGGCATCTGCAACCTGCAACAATCATCACAACAGGCTGAAGATGCTCTCTCACAAGGGATGGATGCATTGCAGCAATCATTGGCTGAAACATTGGCTAGTGGTTCTCCTGGAACATCAGGATCATCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCTATGGGAAAGCTAGGAACTCTTGAAGGCTTCCTGCGCCAGGCTGATAATCTACGGCAACAGACACTCCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCCCTTCTTGCAATAAATGATTATTTTTCCCGCCTTCGAGCCCTGAGTTCTCTCTGGCTTGCACGGCCGCGAGAGTAA | 1413 | 45.08 | MGSRSRTVKVGADDINKVVVNGMPSFVSPMPASNPIGEGSSIPSSRISDFRTLEQSLGFQLEDVDLTRNPLYNQIKSNSTTLNSNIQFGPFQIKPLASSDINLPAAIMGSQTLQLQKETHPNLVSTSSGPRENWGESIEADGSPRTDTSTDDTDDKSQRHERDQVNSLGAYDSSNKSKEKSSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRQINELRAAVNSHAGDTELRTIVDSVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSELLKLLVNQLEPLTEQQLMGICNLQQSSQQAEDALSQGMDALQQSLAETLASGSPGTSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 41872209 | 41879729 | - | evm.model.ptg000007l.1309 | HCH9g1309 | 551941 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g1309 | 470 | SMART | brlzneu | 181 | 244 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g1309 | 470 | Pfam | bZIP transcription factor | 185 | 225 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g1309 | 470 | MobiDBLite | consensus disorder prediction | 176 | 197 | - | - | |
HCH9g1309 | 470 | Gene3D | - | 184 | 235 | - | - | |
HCH9g1309 | 470 | Coils | Coil | 261 | 281 | - | - | |
HCH9g1309 | 470 | Coils | Coil | 204 | 231 | - | - | |
HCH9g1309 | 470 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 188 | 203 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g1309 | 470 | MobiDBLite | consensus disorder prediction | 118 | 133 | - | - | |
HCH9g1309 | 470 | FunFam | BZIP family transcription factor | 184 | 233 | - | - | |
HCH9g1309 | 470 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 147 | 470 | - | - | |
HCH9g1309 | 470 | SUPERFAMILY | Leucine zipper domain | 185 | 228 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g1309 | 470 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 183 | 227 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH9g1309 | 470 | ProSiteProfiles | DOG1 domain profile. | 250 | 467 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
HCH9g1309 | 470 | MobiDBLite | consensus disorder prediction | 118 | 203 | - | - | |
HCH9g1309 | 470 | MobiDBLite | consensus disorder prediction | 145 | 166 | - | - | |
HCH9g1309 | 470 | CDD | bZIP_HBP1b-like | 185 | 237 | - | - | |
HCH9g1309 | 470 | Pfam | Seed dormancy control | 267 | 342 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g1252 | HCH-Chr10:44442516 | HCH9g1309 | HCH-Chr9:41872209 | 9.80E-121 | dispersed | |
HCH13g1272 | HCH-Chr13:40631032 | HCH9g1309 | HCH-Chr9:41872209 | 1.10E-74 | dispersed | |
HCH1g0618 | HCH-Chr1:55122479 | HCH9g1309 | HCH-Chr9:41872209 | 1.20E-136 | dispersed | |
HCH3g1129 | HCH-Chr3:34951690 | HCH9g1309 | HCH-Chr9:41872209 | 3.10E-93 | dispersed | |
HCH9g1135 | HCH-Chr9:14851883 | HCH9g1309 | HCH-Chr9:41872209 | 5.40E-84 | dispersed | |
HCH9g1309 | HCH-Chr9:41872209 | HCH4g0180 | HCH-Chr4:1035219 | 4.60E-131 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34201 | PF14144 | DOG1 | 4.60E-30 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH9g1309 | K14431 | - | csv:101219149 | 765.377 |