Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1349 ATGGCATCAATGATGAAGTCTATTTTCTTCGTTATTCTGCTTCTTCTGTTCCCTGTTATGGGATATTGCAAGGATCATAAACCACAACAAGAAGCTTACATTGTTTACTTTGGAGAACACAGTGGAGAGAAAGCGTTATATGAAATAGAAGCAAATCATCACTCTTATTTGCTTTCTGTTAAAGATGACAATCAAGAAGATGCCAAGTCTTCTCTTCTTTATAGCTACAAACACACCATCAATGGCTTTGCTGCTCTTCTTACGAAACAACAAGCTTCCAAACTCAAAGATATGGAAGAGGTGATATCCGTTATTCCGAATCAAGAATACAAAATGCACACAACAAGGTCATGGGAGTTTTCAGGCGTTGAACAAGATGAACCAAAACCTAATGACTTGGTTTCCCAAGCTCAACATGGAAAAGATGTCATCGTTGCCATTATGGATAGCGGTGTGTGGCCAGAATCTAAAAGTTTTAGTGATGGAAAGATGGGACCCATTCCAAAATCATGGAATGGAATTTGTCAGACAGGAACTGCTTTTAATGCATCTCATTGTAATAGGAAGATAATTGGAGCTCGATATTACCTCAGTGGTTATGAGAGCTTTCACGGTCCTCTTAATGAGACACAAGACTACAAATCTCCCCGTGACAAAGATGGTCATGGATCTCACACAGCTTCAATTGTCGGTGGTCGAAGAGTCCATAATGTCTCTGCTTTTCATGGCGTTGCCAGCGGCACTGCTTCTGGTGGCGCTCCAAATGTGAGACTTGCCATATACAAAGTCTGTTGGGCAGCTTCCAATCAAATGAAAGCCAATGGAAACACTTGCTTCAACACAGACATACTGGCTGCCATGGATGATGCCATTGCTGATGGGGTTGATGTTATGAGCTTATCACTTGGAACTGCTAAGCATACCAGTTATATGGAAGATGCTGTTGCTATTGGAGCATTGCATGCCCTTAAGAAAGACATTGTAGTGTCTGCTAGTGCCGGCAACTTTGGTCCTATTCCTTCCAATTTGGCTAATGTTGCTCCATGGATCATAACTGTTGGAGCTAGTACTATAGACAGAGAATTTTACTCTAATGTTGTTCTAGGAAATGGACTGAACATCGAGGGAATGTCAATGTCTCCATTGAAGATGGACAACGAGATGTATCCATTAGTATATGCAGGTTATATTTCTAATGAAAATGTAACCCAATACCAAGCAGGACAGTGCCTTCCAAACTTTCTTTCACCTGAAAAAGCAAAGGGGAAGATAGTATTATGCATGAGAGGAATGGGAGAAGAAATATATACCAGTAGCTTGGAAGTGAAAAGGGCTGGTGGAGTTGGAATGATATTAGCAGATATCCCACAACTTGGAAGCAAGCCATATAGTTATCCTCATTTTCTTCCTGCCACGGTTGTGTCTTATGATGATGCAAACACCATCATGAATTACATTGGCACTTGCAATTGTATGCACCCAAAGGCAAACATTCTTCCGCCAACCACCGTGTATGGCTCCAAGCCGGCTCCACAAATGGCTGAGTTTTCAAGTAGAGGTCCTAATACTATTGACCCCTACATCCTCAAGCCTGACATAACAGCTCCAGGAGTTAATATATTAGCAGCATGGACTGAAGAGGATTCACCCACAAGGCTACCGCGAGATATAGATTCTCGAGTTGTTCAATACAATCTGTTTTCTGGAACCTCAATGTCTTGCCCACATGTATCTGCTGCTGCAGCCCTTCTTAAAGCCGTTCACCCTGATTGGAGTAGTGCTGCTATAAGATCTGCCCTCATGACGACCGCTACAACAACCGACTCAACGGGTTCATTGATGACCGAAGAAATAGATGGCAGCTTAGCAACTCCATTTGCATATGGGGCCGGCCACTTCCGACCCTCATTGGCAGCCGACCCTGGCCTAGTATATGATGCAAACTACACACACTACCTTGACTACCTATGTAGCCTTGGGATGAACAATACTGATACGACATTCAAGTGTCCATCAGAAGTTGCTCCTTCATTCAACCTCAATTACCCTTCAATCGCAATCCCGAATTTCAGAGGGTCGGTGAGCGTGGAAAGGACTGTTACAAATGTTGGTGGAAACAACACAGTGTATTACTTCTATAGTGACCCACCAACAGGAATTACAATAACATCTTCACCAAATGTCTTGGAATTTGATAAAGTTGGTCAGAAGAAGAACTTCACCATAACAGTCGCCGGACACGGGCTAATCGAAGTTGATCAAAACGGACACTCTTTTGGTTGGTACACTTGGAGTGATGGAGTCCACAACGTCAGAAGTCCGATTGCACTCTCATTTACTTAA 2343 42.72 MASMMKSIFFVILLLLFPVMGYCKDHKPQQEAYIVYFGEHSGEKALYEIEANHHSYLLSVKDDNQEDAKSSLLYSYKHTINGFAALLTKQQASKLKDMEEVISVIPNQEYKMHTTRSWEFSGVEQDEPKPNDLVSQAQHGKDVIVAIMDSGVWPESKSFSDGKMGPIPKSWNGICQTGTAFNASHCNRKIIGARYYLSGYESFHGPLNETQDYKSPRDKDGHGSHTASIVGGRRVHNVSAFHGVASGTASGGAPNVRLAIYKVCWAASNQMKANGNTCFNTDILAAMDDAIADGVDVMSLSLGTAKHTSYMEDAVAIGALHALKKDIVVSASAGNFGPIPSNLANVAPWIITVGASTIDREFYSNVVLGNGLNIEGMSMSPLKMDNEMYPLVYAGYISNENVTQYQAGQCLPNFLSPEKAKGKIVLCMRGMGEEIYTSSLEVKRAGGVGMILADIPQLGSKPYSYPHFLPATVVSYDDANTIMNYIGTCNCMHPKANILPPTTVYGSKPAPQMAEFSSRGPNTIDPYILKPDITAPGVNILAAWTEEDSPTRLPRDIDSRVVQYNLFSGTSMSCPHVSAAAALLKAVHPDWSSAAIRSALMTTATTTDSTGSLMTEEIDGSLATPFAYGAGHFRPSLAADPGLVYDANYTHYLDYLCSLGMNNTDTTFKCPSEVAPSFNLNYPSIAIPNFRGSVSVERTVTNVGGNNTVYYFYSDPPTGITITSSPNVLEFDKVGQKKNFTITVAGHGLIEVDQNGHSFGWYTWSDGVHNVRSPIALSFT 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44535517 44538604 - evm.model.ptg000007l.1349 HCH9g1349 551981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1349 780 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 113 IPR037045 -
HCH9g1349 780 ProSiteProfiles Serine proteases, subtilase domain profile. 117 639 - -
HCH9g1349 780 Gene3D - 359 505 - -
HCH9g1349 780 FunFam Subtilisin-like protease SBT1.5 142 370 - -
HCH9g1349 780 Pfam Peptidase inhibitor I9 33 113 IPR010259 -
HCH9g1349 780 SUPERFAMILY Subtilisin-like 112 643 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH9g1349 780 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 775 IPR045051 -
HCH9g1349 780 Pfam Subtilase family 140 615 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH9g1349 780 CDD PA_subtilisin_like 365 488 - -
HCH9g1349 780 Gene3D Peptidase S8/S53 domain 142 652 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH9g1349 780 ProSitePatterns Serine proteases, subtilase family, serine active site. 569 579 IPR023828 -
HCH9g1349 780 PRINTS Subtilisin serine protease family (S8) signature 568 584 IPR015500 -
HCH9g1349 780 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
HCH9g1349 780 PRINTS Subtilisin serine protease family (S8) signature 218 231 IPR015500 -
HCH9g1349 780 FunFam Subtilisin-like protease SBT5.3 22 113 - -
HCH9g1349 780 CDD Peptidases_S8_3 110 601 IPR034197 -
HCH9g1349 780 Pfam Fibronectin type-III domain 679 776 IPR041469 -
HCH9g1349 780 FunFam subtilisin-like protease SBT1.5 359 505 - -
HCH9g1349 780 Gene3D - 656 779 - -
HCH9g1349 780 Pfam PA domain 389 482 IPR003137 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1025 HCH-Chr14:37448572 HCH9g1349 HCH-Chr9:44535517 5.4e-310 dispersed
HCH2g0636 HCH-Chr2:50157575 HCH9g1349 HCH-Chr9:44535517 0.00E+00 dispersed
HCH7g0364 HCH-Chr7:2629960 HCH9g1349 HCH-Chr9:44535517 5.10E-167 dispersed
HCH8g0597 HCH-Chr8:42753632 HCH9g1349 HCH-Chr9:44535517 2.80E-146 dispersed
HCH9g0505 HCH-Chr9:3217585 HCH9g1349 HCH-Chr9:44535517 1.10E-126 dispersed
HCH9g1194 HCH-Chr9:18937507 HCH9g1349 HCH-Chr9:44535517 0.00E+00 dispersed
HCH9g1195 HCH-Chr9:18956881 HCH9g1349 HCH-Chr9:44535517 0.00E+00 dispersed
HCH9g1348 HCH-Chr9:44523204 HCH9g1349 HCH-Chr9:44535517 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1349 - - - 0.0