Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH9g1360 | ATGTCTCTGGAGAGATTTTTGAAGGATTTCGAAGTAGAGCCAAAGCATCCTTCCGAAGAAACTTTAAGGCGATGGAGATCTGCTGTTTCCATCGTTAAGAATCCTCGAAGAAGGTTTCGTAATGTTGCAGATCTTGTTAAACGCTCTGAAGCTGAGAAGAAGAAGCTTAAAATCCAGGAAAAAATTCGAGTTGCTCTTTATGTTCAGAAGGCGGCATTACATTTTATTGATGCTGCAAGTCGAGAAGAATACCACCTGTCAGATGAGGCTAGGAAAGCAGGTTATAGTATTCATCCAGATGAACTCGCATCCATAGTACGTAGCCATGATTATAAGGCCTTGAGATTCCATGGTGGTGTAGAAGGACTTTCAAGGAAAGTTGCTGTCTCACTAAATGAAGGTGTTAGTAAAAAGGAAATATCAGAGAGACAAGAGATTTATGGTTATAACCGTTACACAGAGAAACCTTCCAGATCCTTTTTGATGTTTGTCTGGGAAGCACTTCATGACTTGACATTAATCATCCTAATAGTTTGTGCACTAATTTCGTTAGGTGTCGGAATTGCCACTGAAGGATGGCCGAAGGGAACATATGATGGTTTGGGCATCCTTCTCAGTATTTTATTGGTTGTTTTAGTTACTTCTATCAGTGACTACAAGCAATCTTTGCAATTCAAGGATCTTGACCGGGAGAAGAAAAAAATTTCTGTTGATGTCACTAGAGATGGATTGAGAGAAAAGGTTTCCATTTATGACTTGGTCGTTGGAGATATTGTTCATCTATCAATTGGAGATCAAGTTCCTGCTGATGGGATTTTCATATCAGGATATAGTTTGCTAATTGACGAATCTAGCTTATCAGGTGAGAGTGAACCGGTAAATGTATATGATGCAAAACCGTTTCTTCTTTCTGGAACAAAAGTGCAAGATGGATCTGGAAAAATGATGGTAACAACCGTTGGCATGAGAACTGAATGGGGAAAATTGATGGAAACTCTCAGCGAGGGAGGAGAAGATGAGACTCCACTGCAGGTGAAGCTGAATGGAGTAGCAACTCTTATTGGTAAAATTGGTTTGTCTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTCTGGGAAAAAGCTGCTCAACATCAATTTTCAAATTGGTCTTCAAGTGATGCTCTAAAACTTCTGGATTTCTTCGCCATTGCAGTTACCATAATAGTTGTCGCAGTTCCTGAAGGATTACCACTGGCAGTGACATTGAGCCTGGCATTTGCTATGAAGAAATTGATGGGTGAAAGAGCACTTGTAAGGCATCTATCTGCATGTGAGACTATGGGTTCTGCTAGTTGCATTTGCACGGACAAGACAGGGACATTAACGACAAACCATATGATAGTTAATCGTGCATATGTCTGTGAAAAAATTCTGGAGGTAAAAGGTCATGAGAGTGTAGACAACTTGAAATCAGAGATCTCTGGAAATGTTGTAGACATACTTTTGCAGTCCATATTTAGAAATACTAGCTGTGAAGTGAGTAAAGATAAAGATGGGAAAGACTCGATTGTTGGTGGTTCACCAACAGAATCGGCGTTGTTAGAGTTTGGCTTGCTTTTGAATAGAGATTTTAATGCCCAGTGTACAGAATATAGGATACTTAGTATTGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTTCTTGTGGCTCTTCCCAATGGTGGGGTCAGAGCTTTCGTCAAAGGTGCATCTGAAATAATACTTGGTATGTGTGACAAGATTGTTGATTACAATGGAGACTCTCTTGATTTACCTGAAGAGAAGGCAAGGGATGTCACAAACGTTATAAATGGTTTTGCTTCTGAAGCTTTGAGGACTCTTTCTTTGGCCTTCCAAGATCTGGAGGACCCAAATGACAATTCCTTTCCAAATAATGGATATACATTAATTGCAGTCGTTGGAATCAAGGATCCTGTGCGCCCAGGGGTCCAAGAGGCTGTTAAAACTTGCTTAGCAGCTGGCATAACCGTGCGTATGGTCACTGGTGACAATATCAATACAGCAAAGGCAATTGCTAAAGAATGCGGTATACTTACAGATGATGGTATAGCTATAGAAGGACCAGAATTCCGCAACTTATCTCCTGAGCGGATGAAGCAAGTTATACCGAGACTCCAGGTGATGGCTCGGTCCTTGCCGCTGGACAAATACACTCTGGTTAACAATTTGCGAAGTACGTTTGGTGAGGTCGTCGCAGTGACTGGAGATGGCACCAACGATGCTCCTGCTTTGCATGAATCGGATATTGGACTAGCTATGGGCATTGCAGGGACAGAGGTTGCCAAAGAAAATGCTGATGTCATCATAATGGACGACAATTTTTCAACGATTGTAAATGTAGCAAGATGGGGGCGTGCAGTGTATATTAACATACAAAAGTTTGTGCAGTTTCAGCTAACAGTGAACATTGTTGCTCTAGTGATCAATTTTGTTTCTGCATGCCTCTCAGGATCTGCTCCGCTTACGGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGTGCCTTGGCATTGGCTACAGAGCCTCCCAGTGATGGACTTATGCAGAGACCTCCAATTCCCAAGGGGAGGAGCTTTATTACCAATACTATGTGGAGAAACATCATTGGTCAGAGCATCTATCAGCTTGCTGTTCTCGCGGTTCTTAATTTCGGGGGAAAGCAACTTCTAGGACTTAGCGGCCCTGATTCGACTATAGTTCTCAACACTTTGATATTTAACTCATTTGTGTTTTGCCAGGTTTTTAACGAAATTAACAGCCGTGAGATGGAGAAGATCAACATCTTCCGCGGCATGTTCGACAGCTGGATATTTTTGGGTGTAATGGTATCCACAGTTGTATTCCAAGCAATTATCATCGAGTTTTTGGGCGCTTTCGCTAGCACCGTGCCACTCAGCTGGCAGCTATGGGTACTGAGTGTGTTGATTGGATTTGTGAGCATGCCGGTTGCAGTTGTGTTGAAGTTCATCCCTGTTCAAAACGAAACTACGAAACATCATGATGGCTATGAACCACTCCCTTCTGGCCCAGAGCTAGCTTGA | 3105 | 42.09 | MSLERFLKDFEVEPKHPSEETLRRWRSAVSIVKNPRRRFRNVADLVKRSEAEKKKLKIQEKIRVALYVQKAALHFIDAASREEYHLSDEARKAGYSIHPDELASIVRSHDYKALRFHGGVEGLSRKVAVSLNEGVSKKEISERQEIYGYNRYTEKPSRSFLMFVWEALHDLTLIILIVCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYKQSLQFKDLDREKKKISVDVTRDGLREKVSIYDLVVGDIVHLSIGDQVPADGIFISGYSLLIDESSLSGESEPVNVYDAKPFLLSGTKVQDGSGKMMVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLSFAVLTFLVMTGRFLWEKAAQHQFSNWSSSDALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMGERALVRHLSACETMGSASCICTDKTGTLTTNHMIVNRAYVCEKILEVKGHESVDNLKSEISGNVVDILLQSIFRNTSCEVSKDKDGKDSIVGGSPTESALLEFGLLLNRDFNAQCTEYRILSIEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILGMCDKIVDYNGDSLDLPEEKARDVTNVINGFASEALRTLSLAFQDLEDPNDNSFPNNGYTLIAVVGIKDPVRPGVQEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTDDGIAIEGPEFRNLSPERMKQVIPRLQVMARSLPLDKYTLVNNLRSTFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPSDGLMQRPPIPKGRSFITNTMWRNIIGQSIYQLAVLAVLNFGGKQLLGLSGPDSTIVLNTLIFNSFVFCQVFNEINSREMEKINIFRGMFDSWIFLGVMVSTVVFQAIIIEFLGAFASTVPLSWQLWVLSVLIGFVSMPVAVVLKFIPVQNETTKHHDGYEPLPSGPELA | 1034 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 45094899 | 45102447 | - | evm.model.ptg000007l.1360 | HCH9g1360 | 551992 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH9g1360 | 1034 | SFLD | Haloacid Dehalogenase | 433 | 804 | - | - | |
| HCH9g1360 | 1034 | SUPERFAMILY | HAD-like | 450 | 857 | IPR036412 | - | |
| HCH9g1360 | 1034 | Pfam | Cation transport ATPase (P-type) | 507 | 592 | - | - | |
| HCH9g1360 | 1034 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 8 | 50 | IPR024750 | GO:0005516(InterPro) | |
| HCH9g1360 | 1034 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 117 | 1013 | IPR023298 | - | |
| HCH9g1360 | 1034 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 453 | 459 | IPR018303 | - | |
| HCH9g1360 | 1034 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 457 | 661 | IPR023299 | GO:0000166(InterPro) | |
| HCH9g1360 | 1034 | FunFam | Calcium-transporting ATPase | 649 | 797 | - | - | |
| HCH9g1360 | 1034 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 108 | 1014 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| HCH9g1360 | 1034 | PRINTS | P-type cation-transporting ATPase superfamily signature | 451 | 465 | - | - | |
| HCH9g1360 | 1034 | PRINTS | P-type cation-transporting ATPase superfamily signature | 649 | 660 | - | - | |
| HCH9g1360 | 1034 | PRINTS | P-type cation-transporting ATPase superfamily signature | 752 | 771 | - | - | |
| HCH9g1360 | 1034 | PRINTS | P-type cation-transporting ATPase superfamily signature | 671 | 681 | - | - | |
| HCH9g1360 | 1034 | PRINTS | P-type cation-transporting ATPase superfamily signature | 282 | 296 | - | - | |
| HCH9g1360 | 1034 | PRINTS | P-type cation-transporting ATPase superfamily signature | 776 | 788 | - | - | |
| HCH9g1360 | 1034 | SMART | Cation_ATPase_N_a_2 | 114 | 188 | IPR004014 | - | |
| HCH9g1360 | 1034 | Gene3D | - | 461 | 656 | IPR023299 | GO:0000166(InterPro) | |
| HCH9g1360 | 1034 | Gene3D | - | 166 | 1011 | - | - | |
| HCH9g1360 | 1034 | Gene3D | - | 448 | 797 | IPR023214 | - | |
| HCH9g1360 | 1034 | FunFam | Calcium-transporting ATPase | 213 | 334 | - | - | |
| HCH9g1360 | 1034 | FunFam | Calcium-transporting ATPase | 17 | 77 | - | - | |
| HCH9g1360 | 1034 | Gene3D | - | 134 | 334 | - | - | |
| HCH9g1360 | 1034 | PANTHER | CATION TRANSPORTING ATPASE | 81 | 1013 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| HCH9g1360 | 1034 | FunFam | Calcium-transporting ATPase | 769 | 1015 | - | - | |
| HCH9g1360 | 1034 | Pfam | haloacid dehalogenase-like hydrolase | 642 | 764 | - | - | |
| HCH9g1360 | 1034 | Pfam | Cation transporter/ATPase, N-terminus | 117 | 183 | IPR004014 | - | |
| HCH9g1360 | 1034 | Gene3D | - | 17 | 78 | - | - | |
| HCH9g1360 | 1034 | SFLD | p-type atpase | 433 | 804 | IPR044492 | - | |
| HCH9g1360 | 1034 | FunFam | Calcium-transporting ATPase | 461 | 656 | - | - | |
| HCH9g1360 | 1034 | Pfam | Cation transporting ATPase, C-terminus | 837 | 1011 | IPR006068 | - | |
| HCH9g1360 | 1034 | CDD | P-type_ATPase_Ca_PMCA-like | 140 | 885 | - | - | |
| HCH9g1360 | 1034 | Pfam | E1-E2 ATPase | 234 | 429 | - | - | |
| HCH9g1360 | 1034 | PRINTS | H+-transporting ATPase (proton pump) signature | 752 | 768 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH9g1360 | 1034 | PRINTS | H+-transporting ATPase (proton pump) signature | 784 | 809 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH9g1360 | 1034 | PRINTS | H+-transporting ATPase (proton pump) signature | 610 | 628 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH9g1360 | 1034 | NCBIfam | HAD-IC family P-type ATPase | 717 | 840 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH9g1360 | 1034 | NCBIfam | HAD-IC family P-type ATPase | 203 | 473 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH9g1360 | 1034 | SUPERFAMILY | Calcium ATPase, transduction domain A | 237 | 332 | IPR008250 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g1161 | HCH-Chr10:41579940 | HCH9g1360 | HCH-Chr9:45094899 | 0.00E+00 | dispersed | |
| HCH12g0557 | HCH-Chr12:3273317 | HCH9g1360 | HCH-Chr9:45094899 | 0.00E+00 | dispersed | |
| HCH4g1571 | HCH-Chr4:12260811 | HCH9g1360 | HCH-Chr9:45094899 | 1.50E-249 | dispersed | |
| HCH7g1264 | HCH-Chr7:45540596 | HCH9g1360 | HCH-Chr9:45094899 | 3.80E-231 | dispersed | |
| HCH9g0840 | HCH-Chr9:5944635 | HCH9g1360 | HCH-Chr9:45094899 | 3.70E-13 | dispersed | |
| HCH9g1360 | HCH-Chr9:45094899 | HCH14g0369 | HCH-Chr14:32659956 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH9g1360 | K01537 | - | csv:101206199 | 1706.81 |