Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1376 ATGGCTTCTTCATCATCTGATCCTGGATTGAAGCATGAAATGGGAGTCAGTAGCGGTGTCGGTGTCGGTATCGGTATCGGAGAGTCGTCGGAAATAGTAATTGCCAACGATCAAGTTTTAGTTTACAGAGGGCTGAAGAAAGCAAAGAAAGACAGAGGTTGTACGGCGAAAGAGCGTATTAGTAAAATGCCTCCTTGTGCTGCTGGAAAACGAAGCTCTATTTACCGTGGAGTCACTAGGCATAGATGGACGGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAACAAGTGTATCTGGGGGCATATGATGAAGAAGAGGCAGCAGCTAGAGCATATGACCTGGCTGCCTTAAAATATTGGGGTCCTGGGACGCTCATTAATTTTCCTGTGACTGATTACACAAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCACTTCGGAGAAAGAGCAGTGGATTCTCAAGAGGGATATCTAAATATCGTGGCCTCTCAAGTCGATGGGAGCCTTCATATGGTCGAATGACAGGTCCTGATTACTTCAGCAGCATAAATTATGGAGATGATCAAGTAACAGATAGTGAATATGCACACAGCTTCTGCATTGAAAGGAAGATTGATTTAACAAGTTACATCAAGTGGTGGGGGCCCAACAAAACTCATCAAGCCAATGCTTGCTCCAAATCATCAGATGAAGACAAATATAGTTACGCTGGAGAAGTTGGCAGTGAGCTTAAAGCTCTTGAACAGCCCGCCCGCCCTACGGAGCCATATGAGATGCCTTGTTTGGGTACATTGCATGGAGTAAAAAAGTCAGCTTCCAAAGTTTCTGCTTTAAACATCTTGTTACGGTCAGCAGCCTACAAGAGTTTGCATGAGAAAGCTTTAAACTTGCAGGAAATTAACAATGAGAACGACGAGAATGAAAATAAAAACACCATCAACAAGATAGATCATGGGAAAGCAATTGAGACACATACAAGTCATGGTGATGCCAGTGAGAGATATGGGGCTTTTGGGACGAGTGGCGGATTGCCACTACAGAGAAATATGTTCCCCTTGACCCCTTTCTTGTCTGCTCCTCTTCTTACCAGCTACAACACTGTTGATCCCTTGGGAGATCCAATTCATTGGACATCTCTTGTTCCCGTTCTTCCTACCGAGCTTTCTCGTACAGCTGAGGTTACAAAGACTGAAACCTCATCAACTTACAATATATTTGGGCCTGAAGAATAA 1284 43.77 MASSSSDPGLKHEMGVSSGVGVGIGIGESSEIVIANDQVLVYRGLKKAKKDRGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSYGRMTGPDYFSSINYGDDQVTDSEYAHSFCIERKIDLTSYIKWWGPNKTHQANACSKSSDEDKYSYAGEVGSELKALEQPARPTEPYEMPCLGTLHGVKKSASKVSALNILLRSAAYKSLHEKALNLQEINNENDENENKNTINKIDHGKAIETHTSHGDASERYGAFGTSGGLPLQRNMFPLTPFLSAPLLTSYNTVDPLGDPIHWTSLVPVLPTELSRTAEVTKTETSSTYNIFGPEE 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45279327 45283810 - evm.model.ptg000007l.1376 HCH9g1376 552008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1376 427 MobiDBLite consensus disorder prediction 320 337 - -
HCH9g1376 427 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1376 427 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1376 427 SMART rav1_2 74 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1376 427 Coils Coil 307 332 - -
HCH9g1376 427 SUPERFAMILY DNA-binding domain 73 141 IPR016177 GO:0003677(InterPro)
HCH9g1376 427 Pfam AP2 domain 75 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1376 427 Gene3D AP2/ERF domain 74 142 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1376 427 ProSiteProfiles AP2/ERF domain profile. 74 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH9g1376 427 MobiDBLite consensus disorder prediction 318 337 - -
HCH9g1376 427 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 58 244 - -
HCH9g1376 427 FunFam AP2-like ethylene-responsive transcription factor 73 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1037 HCH-Chr8:46330493 HCH9g1376 HCH-Chr9:45279327 3.00E-46 dispersed
HCH9g0608 HCH-Chr9:4070787 HCH9g1376 HCH-Chr9:45279327 1.80E-28 dispersed
HCH9g1376 HCH-Chr9:45279327 HCH11g1040 HCH-Chr11:41939248 1.90E-06 dispersed
HCH9g1376 HCH-Chr9:45279327 HCH9g0209 HCH-Chr9:1233045 2.10E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34204 PF00847 AP2 3.40E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1376 K09285 - csv:101206434 695.656