Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1382 ATGGGTGATGCGGATGGTGAATTAGTAGGTAGAGGAGGAGGAGGGAAAGGCATGGGAAAGCGTGGATCGACGAATTCAGCAGAGGCAGCTGCATCTCCATGCGGGGCATGCAAATTCTTAAGGAGGAAGTGTGTGAATGGTTGCATATTTGCACCCTATTTCGGGTCTGATCAAGGCGCTGCTCGCTTTGCTGCCGTTCATAAAGTGTTCGGAGCGAGTAATGTGTCGAAGCTCTTGCTTCACATTCCGGTGAATCGGAGACACGATGCCGTTGTCACGATATCGTATGAAGCTCAGGCTAGGCTCTCTGATCCTGTTTATGGTTGTGTCTCTACTGTACTTGCCTTACAACACCAGGTGGCATCTTTGCAGGCGGAGCTTGCGACAGTGCAAACTCAATTGATAAACAGTCGTTTGGCATTTGCTAATGCAATTCAAAACTCGCCATCGCCGCAATTGGGAGGAGTGTTGCAACCGGCGTATTCCAACAACTCTTCCGCCTCAGTAACCACTCATAATGCGATCAATTTGAGTAATTTTGCTTCCAATTATGATCTCCCAGTTGAGACTGATCCATCTCTCCGTAGCTTAGATCATCTTCACCTTTCGCATCGATCAATTGAAGAGGAAGACGATGAAGATAGTCGATTGCCGATCATCTTCGCTAATGAGTTACTTCGTCGAAGATAA 690 47.39 MGDADGELVGRGGGGKGMGKRGSTNSAEAAASPCGACKFLRRKCVNGCIFAPYFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTVLALQHQVASLQAELATVQTQLINSRLAFANAIQNSPSPQLGGVLQPAYSNNSSASVTTHNAINLSNFASNYDLPVETDPSLRSLDHLHLSHRSIEEEDDEDSRLPIIFANELLRRR 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45403445 45405849 - evm.model.ptg000007l.1382 HCH9g1382 552014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1382 229 MobiDBLite consensus disorder prediction 1 24 - -
HCH9g1382 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 31 177 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
HCH9g1382 229 Coils Coil 113 133 - -
HCH9g1382 229 Pfam Lateral organ boundaries (LOB) domain 33 131 IPR004883 -
HCH9g1382 229 ProSiteProfiles LOB domain profile. 32 134 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1304 HCH-Chr5:49201071 HCH9g1382 HCH-Chr9:45403445 3.60E-40 dispersed
HCH5g1307 HCH-Chr5:49447591 HCH9g1382 HCH-Chr9:45403445 1.00E-37 dispersed
HCH8g1410 HCH-Chr8:48776485 HCH9g1382 HCH-Chr9:45403445 5.80E-29 dispersed
HCH9g0123 HCH-Chr9:676969 HCH9g1382 HCH-Chr9:45403445 2.80E-28 dispersed
HCH9g1382 HCH-Chr9:45403445 HCH2g0998 HCH-Chr2:53245819 1.30E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34206 PF03195 LOB 7.50E-38 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1382 - - - 0.0