Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1382 ATGGGTGATGCGGATGGTGAATTAGTAGGTAGAGGAGGAGGAGGGAAAGGCATGGGAAAGCGTGGATCGACGAATTCAGCAGAGGCAGCTGCATCTCCATGCGGGGCATGCAAATTCTTAAGGAGGAAGTGTGTGAATGGTTGCATATTTGCACCCTATTTCGGGTCTGATCAAGGCGCTGCTCGCTTTGCTGCCGTTCATAAAGTGTTCGGAGCGAGTAATGTGTCGAAGCTCTTGCTTCACATTCCGGTGAATCGGAGACACGATGCCGTTGTCACGATATCGTATGAAGCTCAGGCTAGGCTCTCTGATCCTGTTTATGGTTGTGTCTCTACTGTACTTGCCTTACAACACCAGGTGGCATCTTTGCAGGCGGAGCTTGCGACAGTGCAAACTCAATTGATAAACAGTCGTTTGGCATTTGCTAATGCAATTCAAAACTCGCCATCGCCGCAATTGGGAGGAGTGTTGCAACCGGCGTATTCCAACAACTCTTCCGCCTCAGTAACCACTCATAATGCGATCAATTTGAGTAATTTTGCTTCCAATTATGATCTCCCAGTTGAGACTGATCCATCTCTCCGTAGCTTAGATCATCTTCACCTTTCGCATCGATCAATTGAAGAGGAAGACGATGAAGATAGTCGATTGCCGATCATCTTCGCTAATGAGTTACTTCGTCGAAGATAA 690 47.39 MGDADGELVGRGGGGKGMGKRGSTNSAEAAASPCGACKFLRRKCVNGCIFAPYFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTVLALQHQVASLQAELATVQTQLINSRLAFANAIQNSPSPQLGGVLQPAYSNNSSASVTTHNAINLSNFASNYDLPVETDPSLRSLDHLHLSHRSIEEEDDEDSRLPIIFANELLRRR 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45403445 45405849 - evm.model.ptg000007l.1382 HCH9g1382 552014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1382 229 MobiDBLite consensus disorder prediction 1 24 - -
HCH9g1382 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 31 177 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
HCH9g1382 229 Coils Coil 113 133 - -
HCH9g1382 229 Pfam Lateral organ boundaries (LOB) domain 33 131 IPR004883 -
HCH9g1382 229 ProSiteProfiles LOB domain profile. 32 134 IPR004883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1382 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g1304 HCH-Chr5:49201071 HCH9g1382 HCH-Chr9:45403445 3.60E-40 dispersed
HCH5g1307 HCH-Chr5:49447591 HCH9g1382 HCH-Chr9:45403445 1.00E-37 dispersed
HCH8g1410 HCH-Chr8:48776485 HCH9g1382 HCH-Chr9:45403445 5.80E-29 dispersed
HCH9g0123 HCH-Chr9:676969 HCH9g1382 HCH-Chr9:45403445 2.80E-28 dispersed
HCH9g1382 HCH-Chr9:45403445 HCH2g0998 HCH-Chr2:53245819 1.30E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH10g0180 . 1 214 AS2 family AT1G65620 65.9 1.1e-70 263.1
HCH2g0088 . 2 110 AS2 family AT1G65620 81.7 2.3e-47 185.7
HCH8g1410 . 3 113 AS2 family AT1G65620 73.9 1.1e-44 176.8
HCH9g0123 . 1 172 AS2 family AT1G65620 52.6 2.4e-44 175.6
HCH13g0848 . 1 117 AS2 family AT1G65620 66.7 1.9e-41 166.0
HCH3g0362 . 1 118 AS2 family AT1G65620 70.3 3.2e-41 165.2
HCH14g1105 . 12 117 AS2 family AT1G65620 65.1 2.8e-37 152.1
HCH2g0088 . 1 130 AS2 family AT5G66870 83.1 9.2e-59 224.2
HCH10g0180 . 4 129 AS2 family AT5G66870 69.8 4.1e-43 172.2
HCH14g1105 . 12 129 AS2 family AT5G66870 64.4 1.9e-40 163.3
HCH9g0123 . 7 113 AS2 family AT5G66870 68.2 1.6e-39 160.2
HCH8g1410 . 1 113 AS2 family AT5G66870 68.1 2.1e-39 159.8
HCH3g0362 . 1 125 AS2 family AT5G66870 61.6 1.8e-38 156.8
HCH13g0848 . 1 115 AS2 family AT5G66870 61.7 2.0e-37 153.3
HCH2g0088 . 4 118 AS2 family AT2G23660 69.6 2.2e-44 176.4
HCH10g0180 . 6 130 AS2 family AT2G23660 64.8 3.9e-41 165.6
HCH8g1410 . 8 113 AS2 family AT2G23660 64.2 1.8e-38 156.8
HCH9g0123 . 7 121 AS2 family AT2G23660 59.8 5.2e-38 155.2
HCH14g1105 . 12 125 AS2 family AT2G23660 61.4 7.5e-37 151.4
HCH3g0362 . 9 132 AS2 family AT2G23660 58.9 1.7e-36 150.2
HCH13g0848 . 4 114 AS2 family AT3G27650 86.5 4.5e-54 207.6
HCH9g0123 . 4 114 AS2 family AT3G27650 84.7 1.9e-52 202.2
HCH8g1410 . 4 114 AS2 family AT3G27650 78.4 1.8e-47 185.7
HCH3g0362 . 9 114 AS2 family AT3G27650 77.4 4.3e-44 174.5
HCH10g0180 . 3 112 AS2 family AT3G27650 67.3 9.8e-41 163.3
HCH2g0088 . 4 112 AS2 family AT3G27650 67.9 1.3e-40 162.9
HCH8g1410 . 3 113 AS2 family AT5G63090 93.7 3.9e-57 218.0
HCH3g0362 . 3 116 AS2 family AT5G63090 85.1 2.9e-52 201.8
HCH9g0123 . 1 116 AS2 family AT5G63090 82.9 1.9e-51 199.1
HCH13g0848 . 1 113 AS2 family AT5G63090 83.3 3.0e-49 191.8
HCH10g0180 . 1 112 AS2 family AT5G63090 73.7 5.9e-45 177.6
HCH2g0088 . 2 110 AS2 family AT5G63090 70.6 8.8e-41 163.7
HCH3g0911 . 12 148 AS2 family AT5G63090 57.7 4.8e-39 157.9
HCH2g0930 . 12 115 AS2 family AT5G63090 68.3 1.8e-38 156.0
HCH1g0339 . 4 106 AS2 family AT5G63090 69.9 6.9e-38 154.1
HCH1g0339 . 3 117 AS2 family AT2G30130 90.4 1.0e-55 213.4
HCH3g1473 . 3 135 AS2 family AT2G30130 72.6 8.8e-52 200.3
HCH2g0930 . 12 123 AS2 family AT2G30130 75.0 1.6e-45 179.5
HCH3g0911 . 11 113 AS2 family AT2G30130 80.6 3.0e-44 175.3
HCH2g0998 . 7 113 AS2 family AT2G30130 78.5 1.5e-43 172.9
HCH8g1410 . 8 127 AS2 family AT2G30130 62.5 5.5e-38 154.5
HCH3g1271 . 18 162 AS2 family AT2G30130 52.4 7.2e-38 154.1
HCH2g1152 . 36 144 AS2 family AT2G30130 67.9 2.7e-37 152.1
HCH10g0180 . 7 109 AS2 family AT2G30130 68.0 3.6e-37 151.8
HCH13g0584 . 48 150 AS2 family AT2G30130 68.9 8.0e-37 150.6
HCH9g0123 . 8 111 AS2 family AT2G30130 65.4 8.0e-37 150.6
HCH13g0420 . 54 161 AS2 family AT2G30130 64.8 1.0e-36 150.2
HCH3g0911 . 1 165 AS2 family AT1G31320 77.6 3.5e-68 254.6
HCH2g0930 . 1 172 AS2 family AT1G31320 73.6 1.2e-65 246.1
HCH1g0339 . 2 118 AS2 family AT1G31320 71.8 3.2e-45 178.3
HCH3g1473 . 5 170 AS2 family AT1G31320 51.2 1.6e-41 166.0
HCH2g0998 . 8 113 AS2 family AT1G31320 65.1 6.4e-38 154.1
HCH2g1152 . 36 145 AS2 family AT1G31320 68.2 3.2e-37 151.8
HCH3g1271 . 18 149 AS2 family AT1G31320 59.7 5.4e-37 151.0
HCH8g1410 . 9 120 AS2 family AT1G31320 62.5 7.1e-37 150.6
HCH2g1152 . 33 197 AS2 family AT2G28500 58.8 3.4e-50 195.3
HCH3g1271 . 16 187 AS2 family AT2G28500 57.5 1.1e-48 190.3
HCH13g0420 . 50 182 AS2 family AT2G28500 65.4 7.3e-45 177.6
HCH3g1270 . 17 135 AS2 family AT2G28500 73.1 1.6e-44 176.4
HCH1g0528 . 51 170 AS2 family AT2G28500 74.2 3.1e-43 172.2
HCH1g0339 . 5 119 AS2 family AT2G28500 64.3 5.1e-38 154.8
HCH2g0930 . 11 120 AS2 family AT2G28500 66.4 9.6e-37 150.6
HCH3g1270 . 11 135 AS2 family AT1G07900 78.4 7.8e-45 177.2
HCH2g1152 . 33 197 AS2 family AT1G07900 60.4 1.3e-44 176.4
HCH3g1271 . 16 133 AS2 family AT1G07900 72.9 1.3e-44 176.4
HCH1g0528 . 28 170 AS2 family AT1G07900 74.8 1.7e-44 176.0
HCH13g0420 . 24 169 AS2 family AT1G07900 60.3 1.6e-42 169.5
HCH2g0930 . 1 172 AS2 family AT1G16530 58.8 4.1e-50 194.5
HCH3g0911 . 1 165 AS2 family AT1G16530 54.5 3.4e-44 174.9
HCH1g0339 . 5 110 AS2 family AT1G16530 68.2 1.4e-37 152.9
HCH13g0584 . 12 157 AS2 family AT2G30340 73.3 2.5e-57 219.2
HCH1g0301 . 5 136 AS2 family AT2G30340 72.8 4.6e-51 198.4
HCH2g0930 . 9 120 AS2 family AT2G30340 61.6 1.3e-37 153.7
HCH13g0584 . 32 163 AS2 family AT2G40470 80.9 1.9e-57 219.2
HCH1g0301 . 23 136 AS2 family AT2G40470 90.4 3.0e-55 211.8
HCH2g0930 . 9 129 AS2 family AT2G40470 62.0 1.2e-40 163.3
HCH3g0911 . 12 139 AS2 family AT2G40470 59.4 2.1e-40 162.5
HCH13g0561 . 1 174 AS2 family AT3G11090 63.2 6.8e-53 203.8
HCH5g0078 . 1 113 AS2 family AT2G42440 79.6 4.4e-48 188.3
HCH5g1307 . 1 113 AS2 family AT2G42440 72.6 1.7e-44 176.4
HCH5g0079 . 13 130 AS2 family AT2G42440 65.8 3.3e-40 162.2
HCH5g1304 . 8 106 AS2 family AT2G42440 74.7 1.1e-38 157.1
HCH13g1200 . 36 134 AS2 family AT2G42440 70.7 1.6e-37 153.3
HCH5g0078 . 5 113 AS2 family AT3G58190 84.4 7.1e-50 194.1
HCH5g1307 . 3 121 AS2 family AT3G58190 73.9 5.6e-47 184.5
HCH5g0079 . 10 124 AS2 family AT3G58190 69.6 2.4e-42 169.1
HCH5g1304 . 5 114 AS2 family AT3G58190 72.7 2.7e-41 165.6
HCH13g1200 . 36 134 AS2 family AT3G58190 73.7 8.7e-40 160.6
HCH9g1382 . 24 161 AS2 family AT3G58190 55.1 1.6e-38 156.4
HCH5g0078 . 1 141 AS2 family AT2G31310 58.0 2.8e-42 168.7
HCH5g0079 . 6 213 AS2 family AT2G42430 52.4 2.0e-53 206.1
HCH5g1304 . 3 204 AS2 family AT2G42430 51.6 5.2e-49 191.4
HCH5g0078 . 3 107 AS2 family AT2G42430 75.2 5.2e-41 164.9
HCH13g1200 . 36 138 AS2 family AT2G42430 73.8 2.0e-40 162.9
HCH9g1382 . 32 148 AS2 family AT2G42430 65.0 6.3e-39 157.9
HCH5g1307 . 4 107 AS2 family AT2G42430 70.2 5.9e-37 151.4
HCH13g1200 . 36 234 AS2 family AT4G00220 60.7 3.7e-57 218.4
HCH13g1199 . 10 190 AS2 family AT4G00220 54.4 7.4e-42 167.5
HCH13g1200 . 36 252 AS2 family AT2G45420 70.0 6.1e-72 267.7
HCH5g0079 . 18 119 AS2 family AT2G45420 77.5 2.2e-42 169.5
HCH5g1304 . 12 116 AS2 family AT2G45420 76.2 2.5e-41 166.0
HCH9g1382 . 33 139 AS2 family AT2G45420 73.8 2.5e-41 166.0
HCH13g1199 . 10 122 AS2 family AT2G45420 71.7 7.2e-41 164.5
HCH5g1307 . 7 105 AS2 family AT2G45420 73.7 1.0e-39 160.6
HCH5g0078 . 7 105 AS2 family AT2G45420 73.7 4.0e-39 158.7
HCH1g0441 . 8 110 AS2 family AT2G45420 65.0 3.7e-37 152.1
HCH9g1382 . 31 146 AS2 family AT3G03760 89.7 1.3e-53 206.8
HCH13g1200 . 36 137 AS2 family AT3G03760 80.4 2.2e-40 162.9
HCH5g1304 . 6 115 AS2 family AT3G03760 70.9 5.4e-39 158.3
HCH5g0079 . 12 129 AS2 family AT3G03760 64.4 3.5e-38 155.6
HCH5g0078 . 2 111 AS2 family AT3G03760 69.1 4.6e-38 155.2
HCH13g1199 . 1 203 AS2 family AT4G00210 51.3 8.5e-51 197.2
HCH13g1200 . 36 147 AS2 family AT4G00210 71.4 1.0e-43 173.7
HCH9g1382 . 33 134 AS2 family AT4G00210 73.5 1.3e-38 156.8
HCH5g0078 . 2 107 AS2 family AT4G00210 67.9 2.2e-38 156.0
HCH5g1304 . 3 116 AS2 family AT4G00210 61.4 1.4e-37 153.3
HCH5g0079 . 11 120 AS2 family AT4G00210 62.7 5.3e-37 151.4
HCH5g1307 . 2 107 AS2 family AT4G00210 65.1 5.3e-37 151.4
HCH13g1199 . 1 203 AS2 family AT2G45410 52.2 4.9e-47 184.5
HCH13g1200 . 36 142 AS2 family AT2G45410 74.8 7.1e-46 180.6
HCH9g1382 . 6 134 AS2 family AT2G45410 61.2 8.4e-39 157.1
HCH5g1304 . 3 116 AS2 family AT2G45410 60.5 4.2e-38 154.8
HCH5g0078 . 7 102 AS2 family AT2G45410 69.8 1.0e-36 150.2
HCH1g0441 . 1 112 AS2 family AT5G06080 75.9 4.3e-45 177.9
HCH4g1484 . 19 124 AS2 family AT3G13850 76.4 8.7e-42 167.5
HCH9g0366 . 1 179 AS2 family AT1G68510 60.6 1.2e-58 223.4
HCH1g0771 . 1 225 AS2 family AT1G68510 50.4 1.5e-53 206.5
HCH8g1172 . 1 160 AS2 family AT1G68510 63.7 1.5e-53 206.5
HCH14g0354 . 1 104 AS2 family AT1G68510 62.5 6.0e-39 157.9
HCH12g0564 . 1 104 AS2 family AT1G68510 65.4 1.3e-38 156.8
HCH9g0366 . 1 279 AS2 family AT1G67100 52.3 2.5e-69 258.8
HCH8g1172 . 1 135 AS2 family AT1G67100 75.0 1.3e-57 219.9
HCH1g0771 . 1 132 AS2 family AT1G67100 71.2 6.6e-54 207.6
HCH14g0354 . 1 110 AS2 family AT1G67100 66.4 4.8e-44 174.9
HCH12g0564 . 1 110 AS2 family AT1G67100 66.4 5.8e-42 167.9
HCH9g0366 . 1 279 AS2 family AT3G02550 58.9 1.8e-79 292.7
HCH8g1172 . 1 212 AS2 family AT3G02550 57.0 2.8e-61 232.3
HCH1g0771 . 1 152 AS2 family AT3G02550 61.9 1.3e-50 196.8
HCH14g0354 . 1 104 AS2 family AT3G02550 68.3 8.0e-40 161.0
HCH12g0564 . 1 110 AS2 family AT3G02550 62.7 1.7e-37 153.3
HCH14g0354 . 1 223 AS2 family AT5G67420 60.0 4.4e-72 268.1
HCH12g0564 . 1 122 AS2 family AT5G67420 69.7 5.3e-49 191.4
HCH9g0366 . 3 122 AS2 family AT5G67420 62.5 3.9e-44 175.3
HCH8g1172 . 3 112 AS2 family AT5G67420 64.5 2.0e-40 162.9
HCH1g0771 . 3 106 AS2 family AT5G67420 65.4 2.6e-40 162.5
HCH14g0354 . 1 222 AS2 family AT3G49940 59.3 1.0e-68 256.9
HCH12g0564 . 1 131 AS2 family AT3G49940 67.9 8.9e-49 190.7
HCH9g0366 . 3 156 AS2 family AT3G49940 54.1 1.0e-44 177.2
HCH1g0771 . 3 106 AS2 family AT3G49940 68.3 1.2e-40 163.7
HCH8g1172 . 3 112 AS2 family AT3G49940 64.5 5.8e-40 161.4
HCH14g0354 . 1 223 AS2 family AT4G37540 57.5 1.7e-68 256.1
HCH1g0771 . 3 108 AS2 family AT4G37540 67.0 1.6e-39 159.8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34206 PF03195 LOB 7.50E-38 No_clan HCH TF