Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH9g1382 | ATGGGTGATGCGGATGGTGAATTAGTAGGTAGAGGAGGAGGAGGGAAAGGCATGGGAAAGCGTGGATCGACGAATTCAGCAGAGGCAGCTGCATCTCCATGCGGGGCATGCAAATTCTTAAGGAGGAAGTGTGTGAATGGTTGCATATTTGCACCCTATTTCGGGTCTGATCAAGGCGCTGCTCGCTTTGCTGCCGTTCATAAAGTGTTCGGAGCGAGTAATGTGTCGAAGCTCTTGCTTCACATTCCGGTGAATCGGAGACACGATGCCGTTGTCACGATATCGTATGAAGCTCAGGCTAGGCTCTCTGATCCTGTTTATGGTTGTGTCTCTACTGTACTTGCCTTACAACACCAGGTGGCATCTTTGCAGGCGGAGCTTGCGACAGTGCAAACTCAATTGATAAACAGTCGTTTGGCATTTGCTAATGCAATTCAAAACTCGCCATCGCCGCAATTGGGAGGAGTGTTGCAACCGGCGTATTCCAACAACTCTTCCGCCTCAGTAACCACTCATAATGCGATCAATTTGAGTAATTTTGCTTCCAATTATGATCTCCCAGTTGAGACTGATCCATCTCTCCGTAGCTTAGATCATCTTCACCTTTCGCATCGATCAATTGAAGAGGAAGACGATGAAGATAGTCGATTGCCGATCATCTTCGCTAATGAGTTACTTCGTCGAAGATAA | 690 | 47.39 | MGDADGELVGRGGGGKGMGKRGSTNSAEAAASPCGACKFLRRKCVNGCIFAPYFGSDQGAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTVLALQHQVASLQAELATVQTQLINSRLAFANAIQNSPSPQLGGVLQPAYSNNSSASVTTHNAINLSNFASNYDLPVETDPSLRSLDHLHLSHRSIEEEDDEDSRLPIIFANELLRRR | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 45403445 | 45405849 | - | evm.model.ptg000007l.1382 | HCH9g1382 | 552014 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH9g1382 | 229 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
HCH9g1382 | 229 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 31 | 177 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
HCH9g1382 | 229 | Coils | Coil | 113 | 133 | - | - | |
HCH9g1382 | 229 | Pfam | Lateral organ boundaries (LOB) domain | 33 | 131 | IPR004883 | - | |
HCH9g1382 | 229 | ProSiteProfiles | LOB domain profile. | 32 | 134 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g1304 | HCH-Chr5:49201071 | HCH9g1382 | HCH-Chr9:45403445 | 3.60E-40 | dispersed | |
HCH5g1307 | HCH-Chr5:49447591 | HCH9g1382 | HCH-Chr9:45403445 | 1.00E-37 | dispersed | |
HCH8g1410 | HCH-Chr8:48776485 | HCH9g1382 | HCH-Chr9:45403445 | 5.80E-29 | dispersed | |
HCH9g0123 | HCH-Chr9:676969 | HCH9g1382 | HCH-Chr9:45403445 | 2.80E-28 | dispersed | |
HCH9g1382 | HCH-Chr9:45403445 | HCH2g0998 | HCH-Chr2:53245819 | 1.30E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34206 | PF03195 | LOB | 7.50E-38 | No_clan | HCH | TF |
Pathway information
