Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1386 ATGGGTTTCTTTCTTTCTCTCTCTAAAGATAATTCAAGAAGAAGAAGAAGAAGAAGCTATCGCTATACCATTTTCTTAAATCTCTCTTTTCTCTTTATTTTATCTGTTTTCTTTCTCATTCATTCTGTTTCTGATTCCATTCCATTCCAATCCTCAAATTCCAATAAAAACATTGGATTTCGAAACTACGGTACCACTAAAAAAGAGTGTGATGATTTCATTAATCTGACTGACTATGAAGCCAAGTGCTCTGTTCTTAAATCCAAAACCCCACCATGCAATTCCCAAGGTTATATAAATTATCTCTTTATCTTCTATTGCCAGTATGGGAGTTTTTCTGTTCTGGGTTACACTCTTTTGTTCCTATGGCTGCTTGTTTTGTTCTATCTTTTGGGCAACACGGCTTCTGAATACTTCTGTTCTTCCCTTGAAAGTTTGTCAAAGGTGTTGAATTTGTCACCAACGATTGCTGGGGTTACTTTGCTTTCTCTTGGCAATGGAGCTCCTGATGTTTTTGCTACCATTGTTTCCTTCATGGGTGATGGAACCAGTGATGTCGGTTTGAACACTATTCTCGGTGGATCCTCGTTTGTCACGTGTGTCGTTGTCGGGATTATAAGCATTTCACTGCGCCGGCGGCGGATCAACGTGAATAGGTCTGCTTTTATAAGAGATGTTTTGTTTTTCCTGTTGGTTCTTTTGTCGGTTTTCTTGATATTGCTTCATGGATATATCAATTTGTGGGCTGCAATTGCTTTTTCTTCCATGTATGTGGTTTACGTTTTGATTGTTTACGCCTCCCATGTGCAATGGAGGGGTAATAATTCTGATGATTCAAGTCTTGGAAGTGATGTTTATGTACCCCTTTTGAAGGAGGAGTTTGAATGTCAATTGGATGAAATTGTTACTTTAGAAGATGATGGTGAAGATATTAGAATTGAATGCATCTGTCCTAGATTGTCACCTTCTTGTGTTGTTTTCCTTCACATTCTTGAGATTCCGCTTTACTTACCTAGGAGATTGACGATTCCGGTTGTCACGGAAGAAAAGTGGTCTAGACCTTTTGCAGTTGCTTCTGTCACATTAGCTCCAATTCTCTTGTCCCTACTGTGGATATTTCACCATGGAAATGGCCCGTTTGATTCGAACTTGATCGTTTGTCTGGTTGGTTTGACGATAGGAGTTGCGCTCGGGATTTTAGCGTATGTGACGACGGAGAACTCGAATCCGCCAAAGAAGTGCCTGTTTCCTTGGCTAGCAGCAGGTTTCATCATGAGTTTAACCTGGAGTTATATTGTAGCTCAGGAACTGGTAGGCCTATTGGTCTCTCTTGGGTACATAATGGGAATAAGCCCTTCAATATTGGGGCTCACTTTTCTGGCATGGGGGAATTCACTAGGGGATTTGGTTGCCAATGTGACCATGGCCTTGAATGGTGGGCAGAGAGGTGTCCAAATTGCTCTCTCAGGCTGCTATGCCGGTCCCATATTCAACATGCTCTTCGGCCTCGGATTGTCTCTCGTCGGCTCTTCTTGGAAGACGTATCCTCAGTCGGTCTCCATCCCCGCAGATCCATATGTCATGGAGACATTAGGTCTTTTGGTGGGAGGGTTGCTTTGGGCACTTCTGGTTCTACCAAGGAGAGAAATGAGGCTTGATGCAGTCTTAGGAGGAGGGCTATTGGCCATATACATAACTTCTCTGCTTTTGAGGCTGATGCAAACTTTTGGCTCTTCCCATATACACTCTTACCTGCCTATCAACTTAATATGA 1773 42.13 MGFFLSLSKDNSRRRRRRSYRYTIFLNLSFLFILSVFFLIHSVSDSIPFQSSNSNKNIGFRNYGTTKKECDDFINLTDYEAKCSVLKSKTPPCNSQGYINYLFIFYCQYGSFSVLGYTLLFLWLLVLFYLLGNTASEYFCSSLESLSKVLNLSPTIAGVTLLSLGNGAPDVFATIVSFMGDGTSDVGLNTILGGSSFVTCVVVGIISISLRRRRINVNRSAFIRDVLFFLLVLLSVFLILLHGYINLWAAIAFSSMYVVYVLIVYASHVQWRGNNSDDSSLGSDVYVPLLKEEFECQLDEIVTLEDDGEDIRIECICPRLSPSCVVFLHILEIPLYLPRRLTIPVVTEEKWSRPFAVASVTLAPILLSLLWIFHHGNGPFDSNLIVCLVGLTIGVALGILAYVTTENSNPPKKCLFPWLAAGFIMSLTWSYIVAQELVGLLVSLGYIMGISPSILGLTFLAWGNSLGDLVANVTMALNGGQRGVQIALSGCYAGPIFNMLFGLGLSLVGSSWKTYPQSVSIPADPYVMETLGLLVGGLLWALLVLPRREMRLDAVLGGGLLAIYITSLLLRLMQTFGSSHIHSYLPINLI 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45659237 45661009 - evm.model.ptg000007l.1386 HCH9g1386 552018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1386 590 Pfam Sodium/calcium exchanger protein 419 572 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g1386 590 Pfam Sodium/calcium exchanger protein 121 265 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g1386 590 Gene3D - 353 573 IPR044880 -
HCH9g1386 590 Gene3D - 152 285 IPR044880 -
HCH9g1386 590 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 46 579 IPR051359 GO:0006812(PANTHER)|GO:0008324(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0129 HCH-Chr8:5289678 HCH9g1386 HCH-Chr9:45659237 2.00E-42 dispersed
HCH8g0595 HCH-Chr8:42743372 HCH9g1386 HCH-Chr9:45659237 3.90E-117 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1386 K13754 - csv:101204766 734.176