Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1386 ATGGGTTTCTTTCTTTCTCTCTCTAAAGATAATTCAAGAAGAAGAAGAAGAAGAAGCTATCGCTATACCATTTTCTTAAATCTCTCTTTTCTCTTTATTTTATCTGTTTTCTTTCTCATTCATTCTGTTTCTGATTCCATTCCATTCCAATCCTCAAATTCCAATAAAAACATTGGATTTCGAAACTACGGTACCACTAAAAAAGAGTGTGATGATTTCATTAATCTGACTGACTATGAAGCCAAGTGCTCTGTTCTTAAATCCAAAACCCCACCATGCAATTCCCAAGGTTATATAAATTATCTCTTTATCTTCTATTGCCAGTATGGGAGTTTTTCTGTTCTGGGTTACACTCTTTTGTTCCTATGGCTGCTTGTTTTGTTCTATCTTTTGGGCAACACGGCTTCTGAATACTTCTGTTCTTCCCTTGAAAGTTTGTCAAAGGTGTTGAATTTGTCACCAACGATTGCTGGGGTTACTTTGCTTTCTCTTGGCAATGGAGCTCCTGATGTTTTTGCTACCATTGTTTCCTTCATGGGTGATGGAACCAGTGATGTCGGTTTGAACACTATTCTCGGTGGATCCTCGTTTGTCACGTGTGTCGTTGTCGGGATTATAAGCATTTCACTGCGCCGGCGGCGGATCAACGTGAATAGGTCTGCTTTTATAAGAGATGTTTTGTTTTTCCTGTTGGTTCTTTTGTCGGTTTTCTTGATATTGCTTCATGGATATATCAATTTGTGGGCTGCAATTGCTTTTTCTTCCATGTATGTGGTTTACGTTTTGATTGTTTACGCCTCCCATGTGCAATGGAGGGGTAATAATTCTGATGATTCAAGTCTTGGAAGTGATGTTTATGTACCCCTTTTGAAGGAGGAGTTTGAATGTCAATTGGATGAAATTGTTACTTTAGAAGATGATGGTGAAGATATTAGAATTGAATGCATCTGTCCTAGATTGTCACCTTCTTGTGTTGTTTTCCTTCACATTCTTGAGATTCCGCTTTACTTACCTAGGAGATTGACGATTCCGGTTGTCACGGAAGAAAAGTGGTCTAGACCTTTTGCAGTTGCTTCTGTCACATTAGCTCCAATTCTCTTGTCCCTACTGTGGATATTTCACCATGGAAATGGCCCGTTTGATTCGAACTTGATCGTTTGTCTGGTTGGTTTGACGATAGGAGTTGCGCTCGGGATTTTAGCGTATGTGACGACGGAGAACTCGAATCCGCCAAAGAAGTGCCTGTTTCCTTGGCTAGCAGCAGGTTTCATCATGAGTTTAACCTGGAGTTATATTGTAGCTCAGGAACTGGTAGGCCTATTGGTCTCTCTTGGGTACATAATGGGAATAAGCCCTTCAATATTGGGGCTCACTTTTCTGGCATGGGGGAATTCACTAGGGGATTTGGTTGCCAATGTGACCATGGCCTTGAATGGTGGGCAGAGAGGTGTCCAAATTGCTCTCTCAGGCTGCTATGCCGGTCCCATATTCAACATGCTCTTCGGCCTCGGATTGTCTCTCGTCGGCTCTTCTTGGAAGACGTATCCTCAGTCGGTCTCCATCCCCGCAGATCCATATGTCATGGAGACATTAGGTCTTTTGGTGGGAGGGTTGCTTTGGGCACTTCTGGTTCTACCAAGGAGAGAAATGAGGCTTGATGCAGTCTTAGGAGGAGGGCTATTGGCCATATACATAACTTCTCTGCTTTTGAGGCTGATGCAAACTTTTGGCTCTTCCCATATACACTCTTACCTGCCTATCAACTTAATATGA 1773 42.13 MGFFLSLSKDNSRRRRRRSYRYTIFLNLSFLFILSVFFLIHSVSDSIPFQSSNSNKNIGFRNYGTTKKECDDFINLTDYEAKCSVLKSKTPPCNSQGYINYLFIFYCQYGSFSVLGYTLLFLWLLVLFYLLGNTASEYFCSSLESLSKVLNLSPTIAGVTLLSLGNGAPDVFATIVSFMGDGTSDVGLNTILGGSSFVTCVVVGIISISLRRRRINVNRSAFIRDVLFFLLVLLSVFLILLHGYINLWAAIAFSSMYVVYVLIVYASHVQWRGNNSDDSSLGSDVYVPLLKEEFECQLDEIVTLEDDGEDIRIECICPRLSPSCVVFLHILEIPLYLPRRLTIPVVTEEKWSRPFAVASVTLAPILLSLLWIFHHGNGPFDSNLIVCLVGLTIGVALGILAYVTTENSNPPKKCLFPWLAAGFIMSLTWSYIVAQELVGLLVSLGYIMGISPSILGLTFLAWGNSLGDLVANVTMALNGGQRGVQIALSGCYAGPIFNMLFGLGLSLVGSSWKTYPQSVSIPADPYVMETLGLLVGGLLWALLVLPRREMRLDAVLGGGLLAIYITSLLLRLMQTFGSSHIHSYLPINLI 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 45659237 45661009 - evm.model.ptg000007l.1386 HCH9g1386 552018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1386 590 Pfam Sodium/calcium exchanger protein 419 572 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g1386 590 Pfam Sodium/calcium exchanger protein 121 265 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH9g1386 590 Gene3D - 353 573 IPR044880 -
HCH9g1386 590 Gene3D - 152 285 IPR044880 -
HCH9g1386 590 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 46 579 IPR051359 GO:0006812(PANTHER)|GO:0008324(PANTHER)|GO:0016020(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1386 K13754 - - csv:101204766 734.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0129 HCH-Chr8:5289678 HCH9g1386 HCH-Chr9:45659237 2.00E-42 dispersed
HCH8g0595 HCH-Chr8:42743372 HCH9g1386 HCH-Chr9:45659237 3.90E-117 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0942 . 1 406 Antiporters AT5G46110 77.6 6.2e-172 600.5
HCH1g0878 . 76 408 Antiporters AT5G46110 79.6 1.1e-147 520.0
HCH12g1168 . 1 387 Antiporters AT5G54800 75.1 6.3e-158 553.9
HCH6g0777 . 1 397 Antiporters AT5G54800 72.6 6.9e-157 550.4
HCH14g0830 . 22 391 Antiporters AT5G54800 76.3 8.5e-155 543.5
HCH13g0833 . 25 392 Antiporters AT3G01550 60.1 4.3e-119 424.9
HCH3g0343 . 58 413 Antiporters AT3G01550 58.7 1.8e-109 392.9
HCH3g0343 . 1 415 Antiporters AT5G33320 67.5 5.6e-149 524.2
HCH13g0833 . 53 396 Antiporters AT5G33320 60.8 4.2e-112 401.7
HCH14g0830 . 1 388 Antiporters AT1G61800 76.0 1.2e-162 569.7
HCH6g0777 . 42 398 Antiporters AT1G61800 77.6 1.1e-155 546.6
HCH12g1168 . 41 388 Antiporters AT1G61800 77.3 2.2e-153 538.9
HCH7g1518 . 100 400 Antiporters AT1G61800 51.5 2.0e-85 313.2
HCH7g1518 . 62 414 Antiporters AT5G17630 76.7 1.8e-150 529.3
HCH12g1168 . 81 386 Antiporters AT5G17630 54.4 8.7e-89 324.3
HCH6g0777 . 102 396 Antiporters AT5G17630 55.7 9.6e-88 320.9
HCH14g0830 . 92 389 Antiporters AT5G17630 54.2 4.8e-87 318.5
HCH6g0909 . 10 400 Antiporters AT3G13320 74.7 4.5e-160 561.2
HCH2g0639 . 72 445 Antiporters AT3G13320 76.9 1.0e-156 550.1
HCH6g0027 . 1 436 Antiporters AT3G13320 67.0 9.6e-155 543.5
HCH9g0774 . 5 432 Antiporters AT2G38170 68.8 6.9e-159 557.4
HCH11g0094 . 20 430 Antiporters AT2G38170 62.6 7.0e-135 477.6
HCH3g1442 . 51 432 Antiporters AT2G38170 59.5 3.5e-118 422.2
HCH9g0774 . 1 400 Antiporters AT3G51860 69.3 9.3e-148 520.4
HCH11g0094 . 20 400 Antiporters AT3G51860 66.7 4.6e-131 464.9
HCH3g1442 . 52 400 Antiporters AT3G51860 62.9 1.8e-114 409.8
HCH2g0639 . 69 416 Antiporters AT3G51860 52.2 3.2e-84 309.3
HCH9g0774 . 34 437 Antiporters AT5G01490 61.9 8.7e-135 477.2
HCH11g0094 . 29 440 Antiporters AT5G01490 59.7 1.4e-129 459.9
HCH3g1442 . 50 434 Antiporters AT5G01490 56.7 4.5e-115 411.8
HCH6g0027 . 65 436 Antiporters AT5G01490 50.3 2.0e-94 343.2
HCH6g0909 . 30 400 Antiporters AT1G55720 73.7 4.0e-148 521.5
HCH2g0639 . 72 445 Antiporters AT1G55720 72.8 1.8e-145 512.7
HCH6g0027 . 72 433 Antiporters AT1G55720 71.7 5.2e-140 494.6
HCH6g0909 . 10 400 Antiporters AT1G55730 75.2 3.6e-162 568.2
HCH2g0639 . 60 445 Antiporters AT1G55730 74.9 4.2e-158 554.7
HCH6g0027 . 59 437 Antiporters AT1G55730 74.5 7.4e-155 543.9
HCH9g0774 . 59 433 Antiporters AT1G55730 50.1 2.4e-97 352.8
HCH8g0159 . 4 535 Antiporters AT5G27150 79.4 3.1e-240 827.8
HCH6g1660 . 22 527 Antiporters AT5G27150 73.6 1.3e-214 742.7
HCH4g0978 . 21 525 Antiporters AT5G27150 70.3 2.9e-201 698.4
HCH4g0977 . 26 532 Antiporters AT5G27150 63.4 3.4e-178 621.7
HCH12g1234 . 12 516 Antiporters AT5G27150 62.3 4.0e-171 598.2
HCH6g1660 . 10 536 Antiporters AT3G06370 71.3 1.5e-210 729.2
HCH8g0159 . 10 536 Antiporters AT3G06370 71.1 4.7e-207 717.6
HCH4g0978 . 21 527 Antiporters AT3G06370 66.1 2.0e-186 649.0
HCH4g0977 . 23 534 Antiporters AT3G06370 62.5 1.4e-174 609.8
HCH12g1234 . 5 525 Antiporters AT3G06370 60.0 2.4e-163 572.4
HCH12g1234 . 1 522 Antiporters AT5G55470 71.9 1.3e-217 752.7
HCH8g0159 . 18 520 Antiporters AT5G55470 59.8 1.7e-169 592.8
HCH6g1660 . 11 514 Antiporters AT5G55470 59.3 1.8e-168 589.3
HCH4g0978 . 1 511 Antiporters AT5G55470 54.4 1.2e-151 533.5
HCH4g0977 . 18 523 Antiporters AT5G55470 54.7 8.0e-148 520.8
HCH8g0159 . 4 537 Antiporters AT3G05030 79.2 1.9e-240 828.6
HCH6g1660 . 22 535 Antiporters AT3G05030 74.1 3.0e-222 768.1
HCH4g0978 . 21 528 Antiporters AT3G05030 69.7 2.6e-202 701.8
HCH4g0977 . 26 532 Antiporters AT3G05030 63.7 7.4e-181 630.6
HCH12g1234 . 12 516 Antiporters AT3G05030 61.6 9.7e-173 603.6
HCH6g0199 . 102 667 Antiporters AT1G15460 68.3 4.7e-226 780.8
HCH4g0416 . 99 655 Antiporters AT1G15460 67.5 2.5e-219 758.4
HCH6g0432 . 102 645 Antiporters AT1G15460 59.4 7.1e-182 634.0
HCH3g0342 . 102 644 Antiporters AT1G15460 57.0 7.6e-176 614.0
HCH6g0432 . 3 709 Antiporters AT3G06450 69.1 1.3e-292 1002.3
HCH3g0342 . 3 680 Antiporters AT3G06450 68.3 3.7e-276 947.6
HCH4g0416 . 3 634 Antiporters AT3G06450 55.8 5.6e-216 747.7
HCH6g0199 . 7 647 Antiporters AT3G06450 55.2 1.5e-213 739.6
HCH6g0432 . 1 715 Antiporters AT2G47160 79.5 0.0e+00 1161.4
HCH3g0342 . 1 680 Antiporters AT2G47160 74.1 1.6e-303 1038.5
HCH6g0199 . 1 647 Antiporters AT2G47160 56.8 2.0e-218 755.7
HCH4g0416 . 4 634 Antiporters AT2G47160 57.7 2.9e-217 751.9
HCH6g0199 . 1 667 Antiporters AT1G74810 68.2 9.3e-274 939.5
HCH4g0416 . 4 656 Antiporters AT1G74810 66.4 9.4e-258 886.3
HCH6g0432 . 7 645 Antiporters AT1G74810 58.9 5.6e-218 754.2
HCH3g0342 . 7 644 Antiporters AT1G74810 57.8 6.8e-216 747.3
HCH6g0432 . 1 708 Antiporters AT3G62270 82.2 0.0e+00 1171.4
HCH3g0342 . 1 702 Antiporters AT3G62270 75.3 2.3e-307 1051.2
HCH6g0199 . 1 647 Antiporters AT3G62270 58.7 1.0e-222 770.0
HCH4g0416 . 4 634 Antiporters AT3G62270 59.9 1.7e-222 769.2
HCH4g0416 . 1 653 Antiporters AT4G32510 69.4 1.6e-270 928.7
HCH6g0199 . 1 666 Antiporters AT4G32510 66.2 1.2e-262 902.5
HCH6g0432 . 1 646 Antiporters AT4G32510 55.2 1.0e-208 723.4
HCH3g0342 . 1 650 Antiporters AT4G32510 54.9 1.1e-207 719.9
HCH4g0416 . 4 651 Antiporters AT5G25430 70.9 1.0e-269 926.0
HCH6g0199 . 2 655 Antiporters AT5G25430 67.4 1.9e-250 862.1
HCH6g0432 . 7 645 Antiporters AT5G25430 56.4 1.0e-208 723.4
HCH3g0342 . 7 644 Antiporters AT5G25430 55.6 2.6e-204 708.8
HCH4g0540 . 21 586 Antiporters AT5G11800 79.9 1.3e-242 835.9
HCH8g0658 . 14 585 Antiporters AT5G11800 76.2 1.2e-229 792.7
HCH11g1158 . 55 576 Antiporters AT5G11800 69.4 4.1e-193 671.4
HCH11g1158 . 31 574 Antiporters AT5G51710 82.4 3.4e-245 844.3
HCH4g0540 . 50 560 Antiporters AT5G51710 70.0 2.6e-189 658.7
HCH8g0658 . 44 555 Antiporters AT5G51710 69.0 2.8e-183 638.6
HCH8g0658 . 9 582 Antiporters AT2G19600 79.9 9.3e-238 819.7
HCH4g0540 . 33 586 Antiporters AT2G19600 80.3 3.0e-236 814.7
HCH11g1158 . 33 561 Antiporters AT2G19600 68.8 1.8e-185 646.0
HCH4g1859 . 150 565 Antiporters AT1G49810 77.0 1.3e-177 619.4
HCH4g1859 . 1 583 Antiporters AT3G19490 77.2 1.3e-247 852.4
HCH2g1374 . 74 560 Antiporters AT5G12860 90.6 2.5e-253 871.3
HCH11g0980 . 86 568 Antiporters AT5G12860 51.6 5.5e-131 464.9
HCH11g0980 . 1 569 Antiporters AT5G64280 62.9 2.6e-194 675.2
HCH11g0980 . 1 569 Antiporters AT5G64290 68.4 4.9e-212 734.2
HCH7g0137 . 3 379 Antiporters AT4G28390 82.0 2.6e-177 618.2
HCH4g1192 . 96 483 Antiporters AT4G28390 75.9 7.7e-161 563.5
HCH4g1191 . 97 471 Antiporters AT4G28390 74.9 2.4e-154 542.0
HCH3g0135 . 5 303 Antiporters AT4G28390 63.0 2.0e-108 389.4
HCH4g1192 . 94 484 Antiporters AT3G08580 77.2 1.6e-166 582.4
HCH4g1191 . 96 471 Antiporters AT3G08580 76.8 3.0e-160 561.6
HCH7g0137 . 1 378 Antiporters AT3G08580 72.3 1.4e-149 526.2
HCH3g0135 . 7 297 Antiporters AT3G08580 58.6 3.0e-96 349.0
HCH4g1192 . 94 484 Antiporters AT5G13490 82.5 5.8e-180 627.1
HCH4g1191 . 97 471 Antiporters AT5G13490 82.5 4.7e-174 607.4
HCH7g0137 . 1 378 Antiporters AT5G13490 76.9 1.7e-163 572.4
HCH3g0135 . 8 303 Antiporters AT5G13490 62.0 7.2e-106 380.9
HCH3g0135 . 4 301 Antiporters AT5G17400 80.5 3.0e-139 491.5
HCH7g0137 . 79 370 Antiporters AT5G17400 62.7 7.2e-109 390.6
HCH4g1191 . 181 470 Antiporters AT5G17400 62.1 1.5e-106 382.9
HCH4g1192 . 184 473 Antiporters AT5G17400 62.4 1.5e-106 382.9
HCH8g0129 . 84 529 Antiporters AT1G08960 71.0 1.3e-172 603.2
HCH9g1386 . 66 580 Antiporters AT5G17850 56.1 1.5e-152 536.6
HCH6g0491 . 1 529 Antiporters AT2G47600 69.9 1.9e-213 738.8
HCH6g0174 . 1 301 Antiporters AT1G79900 68.9 1.4e-117 419.5
HCH4g1388 . 1 301 Antiporters AT1G79900 68.2 4.5e-116 414.5