Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1403 ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCCCGGGGTCAGCCTTCTAGAGGAGGAGACATTGAGCTAGGAACACATGCTCCTATGAATGCAGGAGATATGGGCATGGAGGATTTTTTTAAAAAGGTTCAAGAGATTGACAAACAGAATGAGAAGCTAGATAAGCTACTGCGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTCACTAAAGCTCCGGCCATGAAAGCAATCAAGCAGCGGATGGAAAAGGATGTCGATGAAGTTGGAAAGATTGCACGTGCTGTGAAGACCAAAGTCGAAGAACTTGACAGAGAGAATTTGGCCAATAGGCAGAAGCCGGGGTGTGGAAAAGGAACAGGTGTAGATAGATCAAGAACAGCAACTACTCTTGCCTTGAAAAAAAAGTTGAAAGACAAGATGACCGAATTTCAGATTTTACGTGAAAAAGTCCATCAAGAGTACCGGGAGGTTGTTGAGAGACGGATTTTCACAGTCACGGGCGCAAGAGCTGATGAAGAGACAATCGAGAAATTAATTGAAACTGGGGATAGTGAACAGATTTTTCAAAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCATAGTGCAGTTAGAGAATTAGAGAGGAAGCTACTTGAGCTACAGCAGGTATTTCTGGACATGGCTGTATTGGTCGATGCACAAGGGGATATGCTCGACAATATTGAATCACATGTTTCAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGTTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTTATCATTGTTGCGGTTATAGTATTGGGAGTCCTTAAGCCATGGAATAATGGTAAGGGTGCCTAA 927 43.15 MNDLLSDSFEIPRGQPSRGGDIELGTHAPMNAGDMGMEDFFKKVQEIDKQNEKLDKLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKIARAVKTKVEELDRENLANRQKPGCGKGTGVDRSRTATTLALKKKLKDKMTEFQILREKVHQEYREVVERRIFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVSSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVAVIVLGVLKPWNNGKGA 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46347448 46376330 + evm.model.ptg000007l.1403 HCH9g1403 552035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1403 308 CDD SynN 37 194 IPR006011 GO:0016020(InterPro)
HCH9g1403 308 Gene3D - 197 300 - -
HCH9g1403 308 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
HCH9g1403 308 FunFam Syntaxin 132 200 300 - -
HCH9g1403 308 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
HCH9g1403 308 Pfam SNARE domain 243 295 IPR000727 -
HCH9g1403 308 MobiDBLite consensus disorder prediction 1 27 - -
HCH9g1403 308 Gene3D - 33 161 - -
HCH9g1403 308 PANTHER SYNTAXIN 39 287 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH9g1403 308 Pfam Syntaxin 39 242 IPR006011 GO:0016020(InterPro)
HCH9g1403 308 Coils Coil 44 71 - -
HCH9g1403 308 SMART SynN_4 32 158 IPR006011 GO:0016020(InterPro)
HCH9g1403 308 SMART tSNARE_6 202 269 IPR000727 -
HCH9g1403 308 Coils Coil 210 230 - -
HCH9g1403 308 SUPERFAMILY t-snare proteins 34 262 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
HCH9g1403 308 CDD SNARE_syntaxin1-like 206 268 - -
HCH9g1403 308 FunFam Syntaxin 132 32 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0746 HCH-Chr2:51142348 HCH9g1403 HCH-Chr9:46347448 1.70E-86 dispersed
HCH9g1199 HCH-Chr9:19151029 HCH9g1403 HCH-Chr9:46347448 1.70E-65 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1403 K08486 - csv:101203075 519.235