Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH9g1407 | ATGGATTTTGATGATTGGGATGGTAAGGCATCAATCTCTGTGATGGATCCATCAAAGAAAGTTGCTGATCGTTATTTGAAGCGTGAGATTCTCGGTGAAGGTACCTATGGTGTTGTTTATAAAGCCATTGATACTCAGACAGGTCAGACGGTTGCTATCAAGAAAATTCGGCTTGGCAAACAAAAAGAAGGGGTTAATTTTACTGCTCTTCGTGAAATCAAGCTTCTTAAGGAGCTGAAAGATCCAAATATAATCGAGTTAATTGATGCTTTCCCTCATAAAGGAAACCTGCATCTCGTTTTTGAATTCATGGAGACTGACCTTGAAGCTGTCATTCGTGATCGAAACATTTTTCTTTCCCCATCTGATATTAAATCTTACCTTCAAATGACATTGAAAGGCCTTGCTTTTTGTCATAACAAATGGGTTTTACATAGGGATATGAAGCCTAATAATTTGTTGATAGGACCAAATGGCCACCTCAAACTTGCTGATTTTGGTTTGGCTCGTATTTTTGGGAGTCCCGATCGTAGGTTTACCCACCAGGTGTTTGCTCGATGGTACAGAGCACCTGAGCTTTTGTTTGGCTCTAAGCAATATGGTTCTTCAGTTGATGTCTGGGCTGCAGCTTGTATTTTTGCTGAACTACTCCTCCGTCGACCTTTTCTTCAGGGTTCGAGTGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCCATGCCTTCTCAGTGGTCTGATATGATGTATCTTCCTGATTATGTGGAGTTCCAATATGTTCCTGCGCCTCCATTACGATCATTATTTCCTATGGCTAGTGAAGATACTCTGGATCTCCTATCAAAGATGTTTGCTTATGATCCAAAAGCTAGAATATCCATTCAGCAAGCACTAGAGCATAGGTACTTCACATCTGCACCACTTCCCACAGATCCCAGTAAGCTTCCCAGACCTGCTTCAAAGCGAGAACCTGTCAACTCAAGAGTTTTGGACTTAAATTCAAATGAGGGTCCTACTGTTCTCTCACCTCCACGAAAGTCAAGAAGAGTAATGCCAGAGCGTGAGGGTTTTGAAGGAAATACATATAGAGCTGATAAGCTTGATGATCATGTTAGTGATTTGCGTGAGGTAGGTGGTGAGAATACTAGCAGGAACGAGCCGGTGCCAATGTCATTAGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACGATTAACAGTGCTGACAGATCACATCTTAAAAGAAAATTAGATCTTGAATTCCAGCAATAA | 1284 | 40.97 | MDFDDWDGKASISVMDPSKKVADRYLKREILGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPSDIKSYLQMTLKGLAFCHNKWVLHRDMKPNNLLIGPNGHLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGSKQYGSSVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPMPSQWSDMMYLPDYVEFQYVPAPPLRSLFPMASEDTLDLLSKMFAYDPKARISIQQALEHRYFTSAPLPTDPSKLPRPASKREPVNSRVLDLNSNEGPTVLSPPRKSRRVMPEREGFEGNTYRADKLDDHVSDLREVGGENTSRNEPVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ | 427 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 46468642 | 46476332 | - | evm.model.ptg000007l.1407 | HCH9g1407 | 552039 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH9g1407 | 427 | Gene3D | Transferase(Phosphotransferase) domain 1 | 106 | 321 | - | - | |
| HCH9g1407 | 427 | SMART | serkin_6 | 25 | 305 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH9g1407 | 427 | ProSiteProfiles | Protein kinase domain profile. | 25 | 305 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH9g1407 | 427 | MobiDBLite | consensus disorder prediction | 412 | 427 | - | - | |
| HCH9g1407 | 427 | Pfam | Protein kinase domain | 27 | 305 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| HCH9g1407 | 427 | MobiDBLite | consensus disorder prediction | 307 | 427 | - | - | |
| HCH9g1407 | 427 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 55 | IPR017441 | GO:0005524(InterPro) | |
| HCH9g1407 | 427 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 143 | 155 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| HCH9g1407 | 427 | PANTHER | CELL DIVISION PROTEIN KINASE | 25 | 305 | IPR050108 | GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER) | |
| HCH9g1407 | 427 | MobiDBLite | consensus disorder prediction | 329 | 343 | - | - | |
| HCH9g1407 | 427 | MobiDBLite | consensus disorder prediction | 349 | 382 | - | - | |
| HCH9g1407 | 427 | FunFam | Putative cyclin-dependent kinase 7 | 106 | 321 | - | - | |
| HCH9g1407 | 427 | CDD | STKc_CDK7 | 24 | 318 | IPR037770 | GO:0005675(InterPro)|GO:0008353(InterPro)|GO:0070985(InterPro) | |
| HCH9g1407 | 427 | SUPERFAMILY | Protein kinase-like (PK-like) | 20 | 312 | IPR011009 | - | |
| HCH9g1407 | 427 | Gene3D | Phosphorylase Kinase; domain 1 | 15 | 105 | - | - | |
| HCH9g1407 | 427 | FunFam | Cyclin-dependent kinase D-1 | 16 | 105 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH6g1162 | HCH-Chr6:46136810 | HCH9g1407 | HCH-Chr9:46468642 | 1.30E-53 | dispersed | |
| HCH8g1125 | HCH-Chr8:46964354 | HCH9g1407 | HCH-Chr9:46468642 | 2.20E-43 | dispersed | |
| HCH9g0868 | HCH-Chr9:6216658 | HCH9g1407 | HCH-Chr9:46468642 | 2.00E-58 | dispersed | |
| HCH9g1407 | HCH-Chr9:46468642 | HCH5g0539 | HCH-Chr5:3699647 | 2.70E-45 | dispersed | |
| HCH9g1407 | HCH-Chr9:46468642 | HCH4g0096 | HCH-Chr4:516201 | 4.70E-66 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 81787 | PF00069 | Pkinase | 1.10E-71 | CL0016 | HCH | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH9g1407 | K02202 | - | csv:101217645 | 776.548 |