Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1407 ATGGATTTTGATGATTGGGATGGTAAGGCATCAATCTCTGTGATGGATCCATCAAAGAAAGTTGCTGATCGTTATTTGAAGCGTGAGATTCTCGGTGAAGGTACCTATGGTGTTGTTTATAAAGCCATTGATACTCAGACAGGTCAGACGGTTGCTATCAAGAAAATTCGGCTTGGCAAACAAAAAGAAGGGGTTAATTTTACTGCTCTTCGTGAAATCAAGCTTCTTAAGGAGCTGAAAGATCCAAATATAATCGAGTTAATTGATGCTTTCCCTCATAAAGGAAACCTGCATCTCGTTTTTGAATTCATGGAGACTGACCTTGAAGCTGTCATTCGTGATCGAAACATTTTTCTTTCCCCATCTGATATTAAATCTTACCTTCAAATGACATTGAAAGGCCTTGCTTTTTGTCATAACAAATGGGTTTTACATAGGGATATGAAGCCTAATAATTTGTTGATAGGACCAAATGGCCACCTCAAACTTGCTGATTTTGGTTTGGCTCGTATTTTTGGGAGTCCCGATCGTAGGTTTACCCACCAGGTGTTTGCTCGATGGTACAGAGCACCTGAGCTTTTGTTTGGCTCTAAGCAATATGGTTCTTCAGTTGATGTCTGGGCTGCAGCTTGTATTTTTGCTGAACTACTCCTCCGTCGACCTTTTCTTCAGGGTTCGAGTGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCCATGCCTTCTCAGTGGTCTGATATGATGTATCTTCCTGATTATGTGGAGTTCCAATATGTTCCTGCGCCTCCATTACGATCATTATTTCCTATGGCTAGTGAAGATACTCTGGATCTCCTATCAAAGATGTTTGCTTATGATCCAAAAGCTAGAATATCCATTCAGCAAGCACTAGAGCATAGGTACTTCACATCTGCACCACTTCCCACAGATCCCAGTAAGCTTCCCAGACCTGCTTCAAAGCGAGAACCTGTCAACTCAAGAGTTTTGGACTTAAATTCAAATGAGGGTCCTACTGTTCTCTCACCTCCACGAAAGTCAAGAAGAGTAATGCCAGAGCGTGAGGGTTTTGAAGGAAATACATATAGAGCTGATAAGCTTGATGATCATGTTAGTGATTTGCGTGAGGTAGGTGGTGAGAATACTAGCAGGAACGAGCCGGTGCCAATGTCATTAGATTTTTCTATTTTTGGTGGAAAACCTCCAAATAGACCAACGATTAACAGTGCTGACAGATCACATCTTAAAAGAAAATTAGATCTTGAATTCCAGCAATAA 1284 40.97 MDFDDWDGKASISVMDPSKKVADRYLKREILGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPSDIKSYLQMTLKGLAFCHNKWVLHRDMKPNNLLIGPNGHLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGSKQYGSSVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPMPSQWSDMMYLPDYVEFQYVPAPPLRSLFPMASEDTLDLLSKMFAYDPKARISIQQALEHRYFTSAPLPTDPSKLPRPASKREPVNSRVLDLNSNEGPTVLSPPRKSRRVMPEREGFEGNTYRADKLDDHVSDLREVGGENTSRNEPVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46468642 46476332 - evm.model.ptg000007l.1407 HCH9g1407 552039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1407 427 Gene3D Transferase(Phosphotransferase) domain 1 106 321 - -
HCH9g1407 427 SMART serkin_6 25 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g1407 427 ProSiteProfiles Protein kinase domain profile. 25 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g1407 427 MobiDBLite consensus disorder prediction 412 427 - -
HCH9g1407 427 Pfam Protein kinase domain 27 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH9g1407 427 MobiDBLite consensus disorder prediction 307 427 - -
HCH9g1407 427 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524(InterPro)
HCH9g1407 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH9g1407 427 PANTHER CELL DIVISION PROTEIN KINASE 25 305 IPR050108 GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER)
HCH9g1407 427 MobiDBLite consensus disorder prediction 329 343 - -
HCH9g1407 427 MobiDBLite consensus disorder prediction 349 382 - -
HCH9g1407 427 FunFam Putative cyclin-dependent kinase 7 106 321 - -
HCH9g1407 427 CDD STKc_CDK7 24 318 IPR037770 GO:0005675(InterPro)|GO:0008353(InterPro)|GO:0070985(InterPro)
HCH9g1407 427 SUPERFAMILY Protein kinase-like (PK-like) 20 312 IPR011009 -
HCH9g1407 427 Gene3D Phosphorylase Kinase; domain 1 15 105 - -
HCH9g1407 427 FunFam Cyclin-dependent kinase D-1 16 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1407 K02202 - - csv:101217645 776.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1162 HCH-Chr6:46136810 HCH9g1407 HCH-Chr9:46468642 1.30E-53 dispersed
HCH8g1125 HCH-Chr8:46964354 HCH9g1407 HCH-Chr9:46468642 2.20E-43 dispersed
HCH9g0868 HCH-Chr9:6216658 HCH9g1407 HCH-Chr9:46468642 2.00E-58 dispersed
HCH9g1407 HCH-Chr9:46468642 HCH5g0539 HCH-Chr5:3699647 2.70E-45 dispersed
HCH9g1407 HCH-Chr9:46468642 HCH4g0096 HCH-Chr4:516201 4.70E-66 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0733 . 1 291 Core Cell Cycle Gene Families AT3G48750 85.6 1.1e-149 526.2
HCH9g0868 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.8 1.2e-95 346.7
HCH12g0031 . 14 310 Core Cell Cycle Gene Families AT3G48750 52.0 2.2e-91 332.4
HCH9g0868 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.5 1.3e-153 539.3
HCH12g0031 . 14 313 Core Cell Cycle Gene Families AT3G54180 65.8 6.6e-118 420.6
HCH1g0733 . 1 290 Core Cell Cycle Gene Families AT3G54180 53.8 4.0e-91 331.6
HCH9g0868 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 7.2e-123 436.8
HCH12g0031 . 14 313 Core Cell Cycle Gene Families AT2G38620 57.3 8.6e-92 333.6
HCH12g0031 . 11 310 Core Cell Cycle Gene Families AT1G76540 84.3 9.2e-152 533.1
HCH9g0868 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.0 1.3e-116 416.4
HCH1g0733 . 1 290 Core Cell Cycle Gene Families AT1G76540 52.7 8.2e-92 334.0
HCH12g0031 . 1 310 Core Cell Cycle Gene Families AT1G20930 84.2 5.3e-155 543.9
HCH9g0868 . 1 305 Core Cell Cycle Gene Families AT1G20930 66.3 3.6e-119 424.9
HCH1g0733 . 1 290 Core Cell Cycle Gene Families AT1G20930 54.7 8.0e-95 344.0
HCH3g0634 . 1 516 Core Cell Cycle Gene Families AT5G10270 72.2 7.8e-209 723.4
HCH2g1468 . 1 516 Core Cell Cycle Gene Families AT5G10270 72.5 4.3e-207 717.6
HCH6g0679 . 123 439 Core Cell Cycle Gene Families AT5G10270 55.0 4.3e-98 355.5
HCH7g1131 . 105 421 Core Cell Cycle Gene Families AT5G10270 53.5 7.3e-98 354.8
HCH12g1568 . 146 462 Core Cell Cycle Gene Families AT5G10270 51.8 2.8e-97 352.8
HCH8g0160 . 118 436 Core Cell Cycle Gene Families AT5G10270 51.0 3.0e-96 349.4
HCH1g0137 . 145 461 Core Cell Cycle Gene Families AT5G10270 51.8 2.6e-95 346.3
HCH10g0786 . 109 427 Core Cell Cycle Gene Families AT5G10270 50.7 1.3e-94 344.0
HCH2g0833 . 145 461 Core Cell Cycle Gene Families AT5G10270 52.3 1.7e-94 343.6
HCH3g0471 . 84 400 Core Cell Cycle Gene Families AT5G10270 52.3 2.9e-94 342.8
HCH3g0083 . 102 418 Core Cell Cycle Gene Families AT5G10270 51.4 1.6e-92 337.0
HCH2g1468 . 65 515 Core Cell Cycle Gene Families AT5G64960 71.0 6.3e-173 604.0
HCH3g0634 . 65 515 Core Cell Cycle Gene Families AT5G64960 70.7 6.3e-173 604.0
HCH6g0679 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.7 3.9e-82 302.4
HCH12g1568 . 200 462 Core Cell Cycle Gene Families AT5G64960 51.8 9.6e-81 297.7
HCH7g1131 . 159 421 Core Cell Cycle Gene Families AT5G64960 52.5 9.6e-81 297.7
HCH1g0137 . 199 461 Core Cell Cycle Gene Families AT5G64960 53.2 1.3e-80 297.4
HCH8g0160 . 172 436 Core Cell Cycle Gene Families AT5G64960 50.7 6.2e-80 295.0
HCH2g0833 . 199 461 Core Cell Cycle Gene Families AT5G64960 52.5 2.4e-79 293.1
HCH3g0471 . 138 400 Core Cell Cycle Gene Families AT5G64960 52.2 5.3e-79 292.0
HCH2g0832 . 185 450 Core Cell Cycle Gene Families AT5G64960 50.9 2.6e-78 289.7
HCH3g0083 . 156 420 Core Cell Cycle Gene Families AT5G64960 50.4 8.4e-77 284.6
HCH12g1497 . 154 403 Core Cell Cycle Gene Families AT5G64960 50.2 6.2e-72 268.5
HCH9g1407 . 15 425 Core Cell Cycle Gene Families AT1G73690 74.2 1.1e-173 606.3
HCH9g1407 . 23 359 Core Cell Cycle Gene Families AT1G66750 77.2 9.0e-156 546.6
HCH9g1407 . 19 426 Core Cell Cycle Gene Families AT1G18040 74.5 7.0e-173 603.6
HCH14g0040 . 1 475 Core Cell Cycle Gene Families AT5G63610 76.6 3.6e-208 721.1
HCH10g0472 . 1 482 Core Cell Cycle Gene Families AT4G28980 60.5 4.2e-172 601.3
HCH13g0150 . 5 486 Core Cell Cycle Gene Families AT1G44110 61.3 1.2e-155 546.6
HCH12g0338 . 205 472 Core Cell Cycle Gene Families AT1G44110 57.1 5.6e-89 325.1
HCH4g1352 . 197 475 Core Cell Cycle Gene Families AT1G44110 54.8 2.1e-88 323.2
HCH4g0400 . 175 441 Core Cell Cycle Gene Families AT1G44110 53.2 6.9e-79 291.6
HCH12g0581 . 88 367 Core Cell Cycle Gene Families AT1G44110 52.0 3.5e-75 279.3
HCH12g0338 . 205 483 Core Cell Cycle Gene Families AT1G77390 52.1 2.1e-80 296.6
HCH4g1352 . 196 471 Core Cell Cycle Gene Families AT1G77390 53.3 6.0e-80 295.0
HCH4g0400 . 175 437 Core Cell Cycle Gene Families AT1G77390 51.3 4.3e-70 262.3
HCH12g0338 . 16 483 Core Cell Cycle Gene Families AT5G25380 51.1 4.7e-109 391.7
HCH4g0400 . 9 455 Core Cell Cycle Gene Families AT5G25380 51.3 6.4e-106 381.3
HCH13g0150 . 205 476 Core Cell Cycle Gene Families AT5G25380 55.5 5.8e-83 305.1
HCH12g0581 . 88 360 Core Cell Cycle Gene Families AT5G25380 50.4 6.2e-69 258.5
HCH7g0708 . 100 325 Core Cell Cycle Gene Families AT5G25380 57.1 6.4e-66 248.4
HCH12g0338 . 10 421 Core Cell Cycle Gene Families AT5G11300 51.4 3.4e-93 339.0
HCH4g0400 . 64 391 Core Cell Cycle Gene Families AT5G11300 57.0 1.7e-89 326.6
HCH13g0150 . 205 424 Core Cell Cycle Gene Families AT5G11300 59.1 1.1e-70 264.2
HCH4g0610 . 84 299 Core Cell Cycle Gene Families AT5G11300 50.9 3.5e-58 222.6
HCH12g0581 . 88 302 Core Cell Cycle Gene Families AT5G11300 53.7 3.6e-55 212.6
HCH7g0708 . 75 274 Core Cell Cycle Gene Families AT5G11300 52.4 4.9e-52 202.2
HCH4g1352 . 46 475 Core Cell Cycle Gene Families AT1G15570 54.1 2.7e-120 429.1
HCH12g0338 . 206 483 Core Cell Cycle Gene Families AT1G15570 60.8 1.3e-95 347.1
HCH13g0150 . 206 481 Core Cell Cycle Gene Families AT1G15570 53.6 9.4e-81 297.7
HCH4g1352 . 4 475 Core Cell Cycle Gene Families AT1G80370 53.9 1.2e-120 430.3
HCH13g0150 . 206 471 Core Cell Cycle Gene Families AT1G80370 56.4 5.6e-81 298.5
HCH4g0610 . 97 358 Core Cell Cycle Gene Families AT1G80370 52.3 4.8e-72 268.9
HCH4g0610 . 3 365 Core Cell Cycle Gene Families AT5G43080 59.3 1.3e-114 409.8
HCH12g0581 . 3 370 Core Cell Cycle Gene Families AT5G43080 53.7 9.8e-102 367.1
HCH7g0708 . 27 334 Core Cell Cycle Gene Families AT5G43080 50.6 4.0e-79 292.0
HCH12g0338 . 207 476 Core Cell Cycle Gene Families AT5G43080 54.4 4.4e-78 288.5
HCH4g0400 . 177 454 Core Cell Cycle Gene Families AT5G43080 52.0 8.4e-77 284.3
HCH4g1352 . 199 475 Core Cell Cycle Gene Families AT5G43080 51.4 1.6e-75 280.0
HCH4g0610 . 1 365 Core Cell Cycle Gene Families AT1G47210 57.4 3.7e-115 411.8
HCH12g0581 . 1 370 Core Cell Cycle Gene Families AT1G47210 53.1 1.2e-105 380.2
HCH7g0708 . 65 333 Core Cell Cycle Gene Families AT1G47210 55.4 1.3e-83 307.0
HCH12g0338 . 208 476 Core Cell Cycle Gene Families AT1G47210 53.5 3.4e-76 282.3
HCH4g0400 . 177 443 Core Cell Cycle Gene Families AT1G47210 51.3 1.7e-75 280.0
HCH4g1352 . 199 470 Core Cell Cycle Gene Families AT1G47210 51.6 2.2e-75 279.6
HCH4g0610 . 69 363 Core Cell Cycle Gene Families AT1G47220 58.0 3.5e-93 338.6
HCH12g0581 . 88 368 Core Cell Cycle Gene Families AT1G47220 56.4 1.1e-86 317.0
HCH13g0150 . 195 471 Core Cell Cycle Gene Families AT1G47220 50.2 3.1e-73 272.3
HCH12g0338 . 193 473 Core Cell Cycle Gene Families AT1G47220 50.2 7.1e-70 261.2
HCH4g0610 . 1 363 Core Cell Cycle Gene Families AT1G47230 57.1 6.5e-112 401.0
HCH12g0581 . 1 370 Core Cell Cycle Gene Families AT1G47230 55.4 1.3e-107 386.7
HCH7g0708 . 54 333 Core Cell Cycle Gene Families AT1G47230 54.4 6.3e-83 304.7
HCH12g0338 . 208 476 Core Cell Cycle Gene Families AT1G47230 52.2 5.0e-72 268.5
HCH4g1352 . 200 470 Core Cell Cycle Gene Families AT1G47230 51.3 1.9e-71 266.5
HCH9g0977 . 1 448 Core Cell Cycle Gene Families AT4G37490 51.0 1.1e-107 387.1
HCH13g1311 . 141 376 Core Cell Cycle Gene Families AT4G37490 50.2 8.7e-60 228.0
HCH9g0977 . 1 339 Core Cell Cycle Gene Families AT5G06150 52.3 2.9e-79 292.4
HCH2g1311 . 118 306 Core Cell Cycle Gene Families AT5G06150 63.0 2.1e-61 233.0
HCH12g0061 . 156 328 Core Cell Cycle Gene Families AT5G06150 52.6 2.5e-46 183.0
HCH13g1311 . 137 309 Core Cell Cycle Gene Families AT5G06150 53.2 2.8e-45 179.5
HCH13g0981 . 30 197 Core Cell Cycle Gene Families AT5G06150 53.0 1.5e-43 173.7
HCH9g0977 . 1 403 Core Cell Cycle Gene Families AT3G11520 53.6 3.0e-96 349.0
HCH2g1311 . 24 365 Core Cell Cycle Gene Families AT3G11520 51.3 6.4e-86 314.7
HCH13g0981 . 26 256 Core Cell Cycle Gene Families AT3G11520 51.3 9.2e-61 231.1
HCH13g1311 . 144 370 Core Cell Cycle Gene Families AT3G11520 50.7 1.1e-58 224.2
HCH2g1311 . 1 403 Core Cell Cycle Gene Families AT2G26760 56.3 8.8e-112 400.6
HCH9g0977 . 151 440 Core Cell Cycle Gene Families AT2G26760 61.0 2.1e-97 352.8
HCH14g0711 . 19 428 Core Cell Cycle Gene Families AT2G17620 60.1 1.4e-126 449.9
HCH13g1311 . 58 415 Core Cell Cycle Gene Families AT2G17620 62.0 1.9e-115 412.9
HCH13g0981 . 4 299 Core Cell Cycle Gene Families AT2G17620 68.0 5.7e-112 401.4
HCH12g0061 . 34 433 Core Cell Cycle Gene Families AT2G17620 53.9 2.7e-109 392.5
HCH14g0711 . 23 385 Core Cell Cycle Gene Families AT4G35620 60.3 1.7e-107 386.3
HCH13g1311 . 34 370 Core Cell Cycle Gene Families AT4G35620 57.2 1.9e-95 346.3
HCH13g0981 . 18 256 Core Cell Cycle Gene Families AT4G35620 72.3 6.5e-91 331.3
HCH12g0061 . 34 387 Core Cell Cycle Gene Families AT4G35620 53.5 2.5e-90 329.3
HCH12g0061 . 1 430 Core Cell Cycle Gene Families AT1G20610 65.1 4.2e-147 518.1
HCH14g0711 . 36 428 Core Cell Cycle Gene Families AT1G20610 59.2 2.3e-121 432.6
HCH13g1311 . 66 413 Core Cell Cycle Gene Families AT1G20610 62.6 3.3e-115 412.1
HCH13g0981 . 1 299 Core Cell Cycle Gene Families AT1G20610 64.8 1.4e-105 380.2
HCH12g0061 . 1 327 Core Cell Cycle Gene Families AT1G76310 62.6 9.2e-105 377.1
HCH14g0711 . 1 325 Core Cell Cycle Gene Families AT1G76310 53.5 6.4e-82 301.2
HCH13g1311 . 34 309 Core Cell Cycle Gene Families AT1G76310 57.1 6.2e-77 284.6
HCH13g0981 . 1 196 Core Cell Cycle Gene Families AT1G76310 61.1 8.1e-61 231.1
HCH2g1311 . 139 305 Core Cell Cycle Gene Families AT1G76310 52.7 8.5e-42 167.9
HCH9g0977 . 174 339 Core Cell Cycle Gene Families AT1G76310 53.0 3.6e-40 162.5
HCH4g0920 . 1 334 Core Cell Cycle Gene Families AT1G70210 61.3 1.5e-107 386.3
HCH1g1001 . 1 326 Core Cell Cycle Gene Families AT1G70210 61.5 1.0e-103 373.6
HCH4g1861 . 45 329 Core Cell Cycle Gene Families AT4G34160 54.8 4.5e-76 282.0
HCH7g0676 . 77 348 Core Cell Cycle Gene Families AT4G34160 52.3 3.4e-68 255.8
HCH14g0311 . 56 338 Core Cell Cycle Gene Families AT4G34160 50.3 2.9e-67 252.7
HCH12g0596 . 65 288 Core Cell Cycle Gene Families AT4G34160 56.7 8.4e-67 251.1
HCH14g0311 . 58 330 Core Cell Cycle Gene Families AT5G67260 50.2 1.3e-70 263.8
HCH4g1861 . 40 328 Core Cell Cycle Gene Families AT5G67260 50.7 2.8e-68 256.1
HCH12g0596 . 67 294 Core Cell Cycle Gene Families AT5G67260 51.1 6.1e-63 238.4
HCH14g0311 . 63 330 Core Cell Cycle Gene Families AT3G50070 52.6 5.4e-71 265.0
HCH4g0259 . 69 282 Core Cell Cycle Gene Families AT5G65420 55.9 1.8e-63 239.6
HCH13g1196 . 52 250 Core Cell Cycle Gene Families AT5G65420 57.9 1.1e-60 230.3
HCH13g1196 . 50 231 Core Cell Cycle Gene Families AT5G10440 56.3 1.6e-57 219.5
HCH4g0259 . 64 242 Core Cell Cycle Gene Families AT5G10440 57.2 1.3e-54 209.9
HCH14g0245 . 1 273 Core Cell Cycle Gene Families AT5G27620 68.1 3.1e-104 375.2
HCH2g1221 . 1 88 Core Cell Cycle Gene Families AT2G27960 90.9 5.8e-43 169.9
HCH3g1185 . 1 88 Core Cell Cycle Gene Families AT2G27960 88.6 8.3e-42 166.0
HCH2g1221 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 2.2e-39 157.9
HCH3g1185 . 1 79 Core Cell Cycle Gene Families AT2G27970 88.6 2.8e-39 157.5
HCH1g0613 . 4 1024 Core Cell Cycle Gene Families AT3G12280 71.3 0.0e+00 1390.6
HCH4g1000 . 1 467 Core Cell Cycle Gene Families AT1G02970 61.7 6.0e-161 564.3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81787 PF00069 Pkinase 1.10E-71 CL0016 HCH PK