Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH9g1409 ATGGAGTTTGTAGGAGACAAGAAGGAAGTAGATTCAGCCAACGATATTAACAAGCTCAATACTTCTCTTGATTCTTCTTATTCACTTTCACTCCCTGCTGAAAATACTAAAGAAGCTGAAGATTTACGTGAACGCCTTGCTCGAGATCTTAAAGATGGCCTTCATCCCCTTAAGCACAAGTTTGCATTTTGGTACACTCGTCGAACACCTGGAGTTCGGACTCAAACATCGTATGAGGATAATATAAAAAAGCTTGTGGACTTTAGCACGGTTGAAAGTTTTTGGGTAAGTTATTGCCATTTGGCTCGTCCCGCTTCATTGCCAAGTCCTACAGATTTGCATCTTTTCAAGGAAGGGATTCGCCCACTTTGGGAGGATTCTGCTAACTGCAATGGTGGAAAATGGATAATACGCTTTAAGAAAATGGTGTCAGGCCGCTTTTGGGAAGATCTAGTTCTTGCATTAGTGGGTGACCAACTTGATTATGGAGATAACATATGTGGTGCTGTGCTTAGTACTCGTTTCAATGAGGATATTTTGAGCGTCTGGAATCGCAATGCATCTGATCATCAGGCAGTAATGGGTCTGAGAGATTCAATCAAACGCCATTTAAAGCTCCCACATGGATATGTTATGGAATACAAACCCCACGACGCTTCTCTACGTGATAACTCATCATATCGAAACACGTGGCTGCGAGGGTAA 705 42.27 MEFVGDKKEVDSANDINKLNTSLDSSYSLSLPAENTKEAEDLRERLARDLKDGLHPLKHKFAFWYTRRTPGVRTQTSYEDNIKKLVDFSTVESFWVSYCHLARPASLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKMVSGRFWEDLVLALVGDQLDYGDNICGAVLSTRFNEDILSVWNRNASDHQAVMGLRDSIKRHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRG 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 46480960 46492296 - evm.model.ptg000007l.1409 HCH9g1409 552041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH9g1409 234 SUPERFAMILY eIF4e-like 33 230 IPR023398 -
HCH9g1409 234 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 35 222 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
HCH9g1409 234 Gene3D RNA Cap, Translation Initiation Factor Eif4e 29 227 IPR023398 -
HCH9g1409 234 Pfam Eukaryotic initiation factor 4E 56 214 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
HCH9g1409 234 ProSitePatterns Eukaryotic initiation factor 4E signature. 112 135 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
HCH9g1409 234 FunFam Eukaryotic translation initiation factor NCBP 28 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1472 HCH-Chr6:48359840 HCH9g1409 HCH-Chr9:46480960 5.60E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH9g1409 K03259 - csv:101204290 434.106