Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe01g0018 | ATGGCTGCATCTTCTTCATCCGTTCCAGTTTTTGGAGTTCGTGAAGAAGCCCAGATGAGACCTCAACAGCAACAACAACAATCTAACTCTTCGGGTGCTCCTCCGGCAGCTCCTCAAGCCCAGAAGAAAAAAAGAAACCAACCAGGAACTCCAAATCCAGATGCGGAGGTGATAGCTTTGAGTCCGAAGACATTAATGGCGACCAACAGATTCATATGCGAAGTTTGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAGCTTCACAGAAGAGGACACAATTTGCCTTGGAAATTAAAGCAAAAAAGCACTAAAGAGCCAAAAAGGAAGGTTTATTTATGCCCAGAACCCACATGCGTTCATCACGACCCTTCAAGGGCTCTCGGTGATTTAACTGGCATCAAAAAGCACTACTCGAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGATAAGTGCTCTAAGCGCTACGCCGTTCAGTCCGATTGGAAAGCTCATTCCAAAACCTGCGGCACCAGAGAGTATCGATGCGATTGTGGCACTCTCTTCTCCAGACGGGACAGTTTCATTACCCACAGAGCCTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACACCCTACAAATTTAGGGTCAGCCATTGGAGGCCATTTATATGGAGGTAATAGCAATGTGGGGTTGACATTATCACAAGTCCCTCAAATTTCCTCTCTTCAAGACCACCCCAACATCACTCAATCAGCTCACGACGTCCTCCGCCTCGGTGGCGGACGTTCCGGGCAATTCACTCATCTCCTGCCTCCCTCCATTGGCTCGTCCTTCCGACCCTCGCCGCAGCAGTCAATGTCGTCGTCGGCTGCAGCGGCGTTCTTCCTGAGTGATCAAACTAACCAAAATAGCTTCCATGAAGATCATCAAGCCCAATCCCAACAAGGGTTGTTTGGAAATAAAGCCTTTCACGGGCTAATGCAATTCCCTGATATCCAAAGTCATACAAATAACAACAACAACAATCCTGCCACAAATCTCTTCAATTTGGGCTTCATTTCAAATCCCACTGCTGATAGTTCTACCAATATCAACAACAACAATAATAATTCCAACAACAATAGCAACAGCAACAACAGCAACAACAACAATCTTCAATCCTCTTTGCTAAATCAATTCAATGCCACAAACAATGGCAACAATGATCAAGGTGGTGCATCCAACATTTTTTCCGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTCCCATCTCTGTACAGCAACTCTCCGGGAGTCGGCGGAGGTGGCAGTAGCAGTACCGGTGGAGCGATTGCACACATGTCGGCGACGGCGCTTCTCCAGAAGGCAGCACAATTGGGCTCAACAACGTCCAGTAGCAACACTACAGCGACATTGCTGAGAACGTTCGGAAGCTCCTCGACTTCAGGAGGAAAAGCATCCGACCGGACGCTTTTCCCACCGAGCTACGGGGGAGTATTCGGCGAAAACGAGAGCAATCTCCAAGACCTGATGAACTCATTCACCTCCGGAGGCTCGGCAGGCGGGCTCTTCGGTGGCGGGATGAGCTCGTTCGGTGGATTCGACGGCGGGAACAACCGAACAAACATGGAAACATTGGAGGATCCGAAACTACAACAGAATCTAAGCACAGTGAGCATGGGAGGGACAGATAGGTTAACAAGAGACTTTCTAGGCGTTGGACAGATTGTAAGAAGTATGAGCGGCGGAGGCGGTGGTGGTGGTGGTGGTTATTCACAGAGAGAACATAAACAACCGCCGCAAGGGATAGTTTTGGAGGGAAATGAGAGCAATTCAGCGCCGTCAAGCCAAGCATTTGGCGGTGGAAATGGAAACTACCAGTGA | 1875 | 48.37 | MAASSSSVPVFGVREEAQMRPQQQQQQSNSSGAPPAAPQAQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTNLGSAIGGHLYGGNSNVGLTLSQVPQISSLQDHPNITQSAHDVLRLGGGRSGQFTHLLPPSIGSSFRPSPQQSMSSSAAAAFFLSDQTNQNSFHEDHQAQSQQGLFGNKAFHGLMQFPDIQSHTNNNNNNPATNLFNLGFISNPTADSSTNINNNNNNSNNNSNSNNSNNNNLQSSLLNQFNATNNGNNDQGGASNIFSVNIMGDQINSAAVPSLYSNSPGVGGGGSSSTGGAIAHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSTSGGKASDRTLFPPSYGGVFGENESNLQDLMNSFTSGGSAGGLFGGGMSSFGGFDGGNNRTNMETLEDPKLQQNLSTVSMGGTDRLTRDFLGVGQIVRSMSGGGGGGGGGYSQREHKQPPQGIVLEGNESNSAPSSQAFGGGNGNYQ | 624 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 2446251 | 2451507 | + | Hsped.01g00180.1 | Hepe01g0018 | 559128 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe01g0018 | 624 | MobiDBLite | consensus disorder prediction | 601 | 624 | - | - | |
Hepe01g0018 | 624 | MobiDBLite | consensus disorder prediction | 18 | 36 | - | - | |
Hepe01g0018 | 624 | MobiDBLite | consensus disorder prediction | 354 | 381 | - | - | |
Hepe01g0018 | 624 | Gene3D | Classic Zinc Finger | 50 | 119 | - | - | |
Hepe01g0018 | 624 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 125 | 204 | - | - | |
Hepe01g0018 | 624 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 108 | 142 | - | - | |
Hepe01g0018 | 624 | MobiDBLite | consensus disorder prediction | 574 | 624 | - | - | |
Hepe01g0018 | 624 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 71 | 93 | IPR013087 | - | |
Hepe01g0018 | 624 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 582 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Hepe01g0018 | 624 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Hepe01g0018 | 624 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 173 | 209 | - | - | |
Hepe01g0018 | 624 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 146 | 170 | - | - | |
Hepe01g0018 | 624 | SUPERFAMILY | beta-beta-alpha zinc fingers | 70 | 167 | IPR036236 | - | |
Hepe01g0018 | 624 | SMART | c2h2final6 | 147 | 167 | IPR013087 | - | |
Hepe01g0018 | 624 | SMART | c2h2final6 | 112 | 142 | IPR013087 | - | |
Hepe01g0018 | 624 | SMART | c2h2final6 | 71 | 93 | IPR013087 | - | |
Hepe01g0018 | 624 | FunFam | protein indeterminate-domain 12-like | 50 | 118 | - | - | |
Hepe01g0018 | 624 | Gene3D | Classic Zinc Finger | 125 | 204 | - | - | |
Hepe01g0018 | 624 | Pfam | Zinc-finger of C2H2 type | 71 | 93 | IPR013087 | - | |
Hepe01g0018 | 624 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 73 | 93 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g0018 | Hepe-Chr1:2446251 | Hepe02g1503 | Hepe-Chr2:19588767 | 1.85e-97 | dispersed | |
Hepe01g0018 | Hepe-Chr1:2446251 | Hepe09g1585 | Hepe-Chr9:43517231 | 1.21e-89 | wgd | |
Hepe01g0018 | Hepe-Chr1:2446251 | HepeContig66g0154 | Hepe-ChrContig66:13039420 | 6.12e-17 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54754 | PF12171 | zf-C2H2_jaz | 3.90E-05 | CL0361 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe01g0018 | K25870 | - | csv:101219959 | 914.064 |