Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0018 ATGGCTGCATCTTCTTCATCCGTTCCAGTTTTTGGAGTTCGTGAAGAAGCCCAGATGAGACCTCAACAGCAACAACAACAATCTAACTCTTCGGGTGCTCCTCCGGCAGCTCCTCAAGCCCAGAAGAAAAAAAGAAACCAACCAGGAACTCCAAATCCAGATGCGGAGGTGATAGCTTTGAGTCCGAAGACATTAATGGCGACCAACAGATTCATATGCGAAGTTTGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAGCTTCACAGAAGAGGACACAATTTGCCTTGGAAATTAAAGCAAAAAAGCACTAAAGAGCCAAAAAGGAAGGTTTATTTATGCCCAGAACCCACATGCGTTCATCACGACCCTTCAAGGGCTCTCGGTGATTTAACTGGCATCAAAAAGCACTACTCGAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGATAAGTGCTCTAAGCGCTACGCCGTTCAGTCCGATTGGAAAGCTCATTCCAAAACCTGCGGCACCAGAGAGTATCGATGCGATTGTGGCACTCTCTTCTCCAGACGGGACAGTTTCATTACCCACAGAGCCTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACACCCTACAAATTTAGGGTCAGCCATTGGAGGCCATTTATATGGAGGTAATAGCAATGTGGGGTTGACATTATCACAAGTCCCTCAAATTTCCTCTCTTCAAGACCACCCCAACATCACTCAATCAGCTCACGACGTCCTCCGCCTCGGTGGCGGACGTTCCGGGCAATTCACTCATCTCCTGCCTCCCTCCATTGGCTCGTCCTTCCGACCCTCGCCGCAGCAGTCAATGTCGTCGTCGGCTGCAGCGGCGTTCTTCCTGAGTGATCAAACTAACCAAAATAGCTTCCATGAAGATCATCAAGCCCAATCCCAACAAGGGTTGTTTGGAAATAAAGCCTTTCACGGGCTAATGCAATTCCCTGATATCCAAAGTCATACAAATAACAACAACAACAATCCTGCCACAAATCTCTTCAATTTGGGCTTCATTTCAAATCCCACTGCTGATAGTTCTACCAATATCAACAACAACAATAATAATTCCAACAACAATAGCAACAGCAACAACAGCAACAACAACAATCTTCAATCCTCTTTGCTAAATCAATTCAATGCCACAAACAATGGCAACAATGATCAAGGTGGTGCATCCAACATTTTTTCCGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTCCCATCTCTGTACAGCAACTCTCCGGGAGTCGGCGGAGGTGGCAGTAGCAGTACCGGTGGAGCGATTGCACACATGTCGGCGACGGCGCTTCTCCAGAAGGCAGCACAATTGGGCTCAACAACGTCCAGTAGCAACACTACAGCGACATTGCTGAGAACGTTCGGAAGCTCCTCGACTTCAGGAGGAAAAGCATCCGACCGGACGCTTTTCCCACCGAGCTACGGGGGAGTATTCGGCGAAAACGAGAGCAATCTCCAAGACCTGATGAACTCATTCACCTCCGGAGGCTCGGCAGGCGGGCTCTTCGGTGGCGGGATGAGCTCGTTCGGTGGATTCGACGGCGGGAACAACCGAACAAACATGGAAACATTGGAGGATCCGAAACTACAACAGAATCTAAGCACAGTGAGCATGGGAGGGACAGATAGGTTAACAAGAGACTTTCTAGGCGTTGGACAGATTGTAAGAAGTATGAGCGGCGGAGGCGGTGGTGGTGGTGGTGGTTATTCACAGAGAGAACATAAACAACCGCCGCAAGGGATAGTTTTGGAGGGAAATGAGAGCAATTCAGCGCCGTCAAGCCAAGCATTTGGCGGTGGAAATGGAAACTACCAGTGA 1875 48.37 MAASSSSVPVFGVREEAQMRPQQQQQQSNSSGAPPAAPQAQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTNLGSAIGGHLYGGNSNVGLTLSQVPQISSLQDHPNITQSAHDVLRLGGGRSGQFTHLLPPSIGSSFRPSPQQSMSSSAAAAFFLSDQTNQNSFHEDHQAQSQQGLFGNKAFHGLMQFPDIQSHTNNNNNNPATNLFNLGFISNPTADSSTNINNNNNNSNNNSNSNNSNNNNLQSSLLNQFNATNNGNNDQGGASNIFSVNIMGDQINSAAVPSLYSNSPGVGGGGSSSTGGAIAHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSTSGGKASDRTLFPPSYGGVFGENESNLQDLMNSFTSGGSAGGLFGGGMSSFGGFDGGNNRTNMETLEDPKLQQNLSTVSMGGTDRLTRDFLGVGQIVRSMSGGGGGGGGGYSQREHKQPPQGIVLEGNESNSAPSSQAFGGGNGNYQ 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2446251 2451507 + Hsped.01g00180.1 Hepe01g0018 559128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0018 624 MobiDBLite consensus disorder prediction 601 624 - -
Hepe01g0018 624 MobiDBLite consensus disorder prediction 18 36 - -
Hepe01g0018 624 MobiDBLite consensus disorder prediction 354 381 - -
Hepe01g0018 624 Gene3D Classic Zinc Finger 50 119 - -
Hepe01g0018 624 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Hepe01g0018 624 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 108 142 - -
Hepe01g0018 624 MobiDBLite consensus disorder prediction 574 624 - -
Hepe01g0018 624 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Hepe01g0018 624 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 582 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe01g0018 624 MobiDBLite consensus disorder prediction 1 56 - -
Hepe01g0018 624 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 173 209 - -
Hepe01g0018 624 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 146 170 - -
Hepe01g0018 624 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Hepe01g0018 624 SMART c2h2final6 147 167 IPR013087 -
Hepe01g0018 624 SMART c2h2final6 112 142 IPR013087 -
Hepe01g0018 624 SMART c2h2final6 71 93 IPR013087 -
Hepe01g0018 624 FunFam protein indeterminate-domain 12-like 50 118 - -
Hepe01g0018 624 Gene3D Classic Zinc Finger 125 204 - -
Hepe01g0018 624 Pfam Zinc-finger of C2H2 type 71 93 IPR013087 -
Hepe01g0018 624 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0018 Hepe-Chr1:2446251 Hepe02g1503 Hepe-Chr2:19588767 1.85e-97 dispersed
Hepe01g0018 Hepe-Chr1:2446251 Hepe09g1585 Hepe-Chr9:43517231 1.21e-89 wgd
Hepe01g0018 Hepe-Chr1:2446251 HepeContig66g0154 Hepe-ChrContig66:13039420 6.12e-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54754 PF12171 zf-C2H2_jaz 3.90E-05 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0018 K25870 - csv:101219959 914.064