Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0038 ATGGTGTTCCAAGATTTCGACCAAATCTCCGAGCGCCGCCGTGCCGAGAGGGCTCGCAAGTTCCGACAGAGGGTGATTATCGCAGTGGTGTCGGCCTCTGTGATCCTCCTGGTGGTGGCCGCGGCGGTGTATGTCCAAGTCTCCTCCACCTCAAAATCCAGCCCGAAAGACGGGAAGAGGAGCAGCAGTAGTGGCAGCTCGAAAGAATCCGACACGGGAGGCGAGACGAAACAGGTGATGCGTGTCCAGAAAATGATCACCATGATATGCAACTCGACGGACTACAAAGACAAATGCGAGGGCACGCTGAAGGAGGGCGTGGACAACGACCCCAGTTCCTGCGAGCCGAAAGACCTTATCAAGCTGGCGATCACGGCCGCGGCGGACGAGCTGAAGTCCGCGTTGAGAAAAGCGACCGCCTTCAAATTTGCAACCCCGGAGGAGAAGGGGGCGTTCGAGGACTGCAAGGTTCTGTTCTTTGACGCGGTGGAGGAGTTGGAGATGGCTGTGAGCGAGGTGAGTAAAAAGAACATGGGAAAGCTGACGGCCAAAACCACGCCGGATCTCAACAACTGGCTGAGCGCGGTGATGTCGTATCTGGAAACATGCGTTGATGGGTTTCCAGAGGGGAAGCTGAAGAAAGACATGGAGAAGTTGGTGATGGCTGGAAAGGAAATGACGAGTAATTCCTTGGCCATGATTTCGCAGGTGGCTACGTTCTTCTCCACGTTTGAGATGCCCGAAGGGGATGGCGCTACAACACGCCGTCGTCTAATGAGCGCCAGCGATGGGCTGCCCAGCTGGATGGACGGCAATGAACGGAGGATACTGAAGGGCGCTACCGTCGGGGATAAGCCCAAGCCTAATGTTGTGGTGGCCAAAGATGGATCTGGACAATTCAAAACTATTAACGAAGCCTTGGCCGCCATGCCTGCAAAATATGATGGACGCAGGTACGTGATCTATGTGAAGGAAGGGATCTACGAGGAGACTGTGGTACTTACCAAAAAGATGGTTAATGTTACAATGTACGGAGATGGATCTCAAAAGAGCCTCATCAGTGGGAACAAGAACTTTGCCGACGGAGTCAGAACCTTCCAAACCGCAACATTTGTGGCACTTGGAGACGGGTTCTTGGGGCAAGCCATAGGATTCAGAAACACAGCGGGTCCGGAGAAGCACCAAGCCGTAGCGGCTCGAGTCCAGGCGGATCGAGCCATATTCGTGAACTGTCGGTTCGAGGGGTACCAGGACACGTTGTACGTGCAAGCGCACCGGCAGTTCTACCGAAGCTGTCTGATAACAGGCACAATCGACTTCATCTTCGGGGACGCGGCGGTGATCTTCCAGAACTGTAACATGATGATAAGAAAGCCGTTGGAGAAGCAGCAGAACATAGTGACAGCACAAGGAAGAGTGGACAAGCACGAGACGACAGGGATTGTGATACAAAACTCGAAGATCTTGCCGGACAAGACACTGGAGGCAGAGAAGGGAAAGTTCAAAAGTTACTTGGGAAGGCCATGGAAGGAGTTCTCTAGGACTATTGTAATGGAGTCCACAATTGAAGATGTGATTCATCCAGATGGATGGATGCCTTGGGAAGGGGATTTTGCACTCAAGACCTTGTACTATGCTGAATTTAACAACCAAGGGCCTGGGGCTAAGACCGATGCCAGAGTCAAATGGCCTGGCTACAAGGTCATTGATAAGGAGGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGGTGGATTGGATCGAGACCACGTCGACTCCTGTTCATGCCGGCCTATTTTGA 1803 52.69 MVFQDFDQISERRRAERARKFRQRVIIAVVSASVILLVVAAAVYVQVSSTSKSSPKDGKRSSSSGSSKESDTGGETKQVMRVQKMITMICNSTDYKDKCEGTLKEGVDNDPSSCEPKDLIKLAITAAADELKSALRKATAFKFATPEEKGAFEDCKVLFFDAVEELEMAVSEVSKKNMGKLTAKTTPDLNNWLSAVMSYLETCVDGFPEGKLKKDMEKLVMAGKEMTSNSLAMISQVATFFSTFEMPEGDGATTRRRLMSASDGLPSWMDGNERRILKGATVGDKPKPNVVVAKDGSGQFKTINEALAAMPAKYDGRRYVIYVKEGIYEETVVLTKKMVNVTMYGDGSQKSLISGNKNFADGVRTFQTATFVALGDGFLGQAIGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYVQAHRQFYRSCLITGTIDFIFGDAAVIFQNCNMMIRKPLEKQQNIVTAQGRVDKHETTGIVIQNSKILPDKTLEAEKGKFKSYLGRPWKEFSRTIVMESTIEDVIHPDGWMPWEGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIDKEEAAKFTIGTFLEVDWIETTSTPVHAGLF 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5517320 5519663 + Hsped.01g00380.1 Hepe01g0038 559148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0038 600 Gene3D - 287 600 IPR012334 -
Hepe01g0038 600 NCBIfam pectinesterase inhibitor domain 83 237 IPR006501 GO:0004857(InterPro)
Hepe01g0038 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 82 238 IPR035513 -
Hepe01g0038 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 83 236 IPR035513 -
Hepe01g0038 600 SMART PMEI_2 81 233 IPR006501 GO:0004857(InterPro)
Hepe01g0038 600 Pfam Pectinesterase 289 584 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe01g0038 600 FunFam Pectinesterase 82 238 - -
Hepe01g0038 600 CDD PMEI-like_3 89 239 - -
Hepe01g0038 600 PANTHER PECTINESTERASE 27 589 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe01g0038 600 MobiDBLite consensus disorder prediction 50 77 - -
Hepe01g0038 600 Pfam Plant invertase/pectin methylesterase inhibitor 85 233 IPR006501 GO:0004857(InterPro)
Hepe01g0038 600 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
Hepe01g0038 600 SUPERFAMILY Pectin lyase-like 286 588 IPR011050 -
Hepe01g0038 600 FunFam Pectinesterase 283 599 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0038 Hepe-Chr1:5517320 Hepe02g2557 Hepe-Chr2:72501621 6.12e-158 dispersed
Hepe01g0038 Hepe-Chr1:5517320 Hepe10g0809 Hepe-Chr10:16410601 1.86e-90 wgd
Hepe01g0038 Hepe-Chr1:5517320 Hepe07g1125 Hepe-Chr7:20386608 1.93e-101 wgd
Hepe01g0038 Hepe-Chr1:5517320 Hepe07g1708 Hepe-Chr7:58901776 4.07e-113 wgd
Hepe01g0038 Hepe-Chr1:5517320 HepeContig65g0050 Hepe-ChrContig65:4828376 1.53e-143 wgd
Hepe01g0038 Hepe-Chr1:5517320 HepeContig66g0115 Hepe-ChrContig66:7762778 4.70e-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0038 - - - 0.0