Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe01g0050 | ATGGATGAGAATGGTGGGATGAAGTTGAGTGGTATCCGCCAGGTTCTGAGGCTGAAACAAACTCTCCAGCACTGGCAAGGCATCACCAAAGCCACACCATCCCATGGAAATCCAAATCATGGGATCCTTTCACCGGCAATCAACAAAAGGGTGAACAATGTGTTGTGTTGTGATTCGGATGAGGAAAGCTGCCAGACTCCTGAACATCCACCGGATGTCCCCAAAGGCTATTTGGCTGTTTATGTTGGCCCTGAGCTACGGAGGTTTATCATTCCCACCACCTATCTTACCCATTCAGTCTTCAAGGTGTTGCTGGAAAAGGCGGAGGAGGAGTTTGGATTCGATCATTGCGGCGCCCTCACGTTACCATGCGAGATCGAAACCTTCAAATATCTTCTCAACTGCATCCACACCCACCACAAGGATCATCATCCTGATAATCCTCATCACCCCACCCCAGCTGCCACTTCTTTAACAATGGAAGGATAA | 489 | 48.88 | MDENGGMKLSGIRQVLRLKQTLQHWQGITKATPSHGNPNHGILSPAINKRVNNVLCCDSDEESCQTPEHPPDVPKGYLAVYVGPELRRFIIPTTYLTHSVFKVLLEKAEEEFGFDHCGALTLPCEIETFKYLLNCIHTHHKDHHPDNPHHPTPAATSLTMEG | 162 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 6317690 | 6318423 | - | Hsped.01g00500.1 | Hepe01g0050 | 559160 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe01g0050 | 162 | Pfam | Auxin responsive protein | 17 | 136 | IPR003676 | GO:0009733(InterPro) | |
| Hepe01g0050 | 162 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 18 | 136 | IPR003676 | GO:0009733(InterPro) | |
| Hepe01g0050 | 162 | MobiDBLite | consensus disorder prediction | 141 | 162 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe01g0050 | Hepe-Chr1:6317690 | Hepe07g1374 | Hepe-Chr7:44929917 | 1.13e-114 | dispersed | |
| Hepe01g0050 | Hepe-Chr1:6317690 | Hepe10g1042 | Hepe-Chr10:41443367 | 7.63e-15 | wgd | |
| Hepe01g0050 | Hepe-Chr1:6317690 | Hepe04g0237 | Hepe-Chr4:44911870 | 1.24e-11 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe01g0050 | K14488 | - | csv:101207913 | 241.506 |