Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0083 ATGTCCTTTTCAGCTGCCTCAAATCTTCCCTCAGGAGGACCCCATTCAGGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCCTGTGCAGGGCCACTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCACAGGGTCACATGGAACAGCTGGAAGCATCAATGCATCAAGGATCAGAGCAACAAATGCCTTCGTTCAACCTACCATCAAAAATACTTTGTAAAGTTGTCAATGTTAATCTTCGGGCGGAACCTGACACAGATGAAGTTTATGCTCAGATAACTCTCTTACCGGAAAGCAATCAAAATGAAGTAACGAGCCCAGATCCCGCCCTTCCTGAGCCTACAAGATGTAACGTCCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCAGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTACATAGGAACCAGTGGCATTTTAGGCACATTTTCCGAGGTCAACCAAGGCGACATTTGCTAACAACCGGGTGGAGCGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGTTGAACAACATGCCATCTTCTGTTATATCAAGTCACAGCATGCATCTTGGAGTTTTAGCTACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTTTTTTACAAACCAAGAACAAGCAGGTCTACATTTCTTGTAAGTCTAAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGTGGAACAATTGTTGGTCTTGGAGATAATGCATCACCTGGGTGGACTAATTCTGATTGGCGATCTTTAAAGGTGCAATGGGATGAGCCTTCATCTATCTTGCGTCCAGATAAGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCATCTAACCCTCTAAGCTCTCAGCCTACGCAGAGGAACAAGCGTCCACGGCCAACTGTACTGCCTTCACCTTCGCCAGATGCAACCGTACTTGGTGGGTGGAAACCTACGGTTGAATCTTCTGCCTTTTCATATACTGAGCCACAGCGCGGAAGGGACCTATATTCATCTCCGAAGTTCAGTACCGCTGCTTCAAATTCACTTGGATTTAATGGGAATAGTTCTCTTGGTGCTGTGTCCAGCAACACCTACTGGTCTAATGCCAATAGGGTGGAAAATGTTATGGACACTTCATCTCATGGAGCTAACAGGGAACCCATTGAAAAGAAACAGAACACTAGGAATGGATGCAGGCTCTTTGGGATCCAGCTTCTTGGAAATTCCAATGTAGATGAAGCTTCTCCAGTTTCAACACCTAAAATGGTGGGTGAGGATAGGCCGGTTCCACCTGTAGACACAGAATTTGACCAGCATTCTGAACCGTCAAACATTCACCGGTCAGATATTCCTTCAGTAAGCTGTGATGCTGATAAATCATGCCTGATTTCCCCTGTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCAAATGCAAGGAATTGCTGTTGGGAGGGCCGTAGATTTAACACGGTTCAATCAATATGATGATCTACTTAGGAAACTGGAGGAGATGTTTGACATAGAGGGTGAGCTTTGTGGCTCTGTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAATGAGTTCTGCAGCATGGTAAGGAAGATATTCATCTACACAACCGAAGAAGTGAAGAGACTGTCGCCCAAGATAAAACTCCCACTCGGTGGAGAAACAAAGCTTAGCAAGCCAGATTCCGATTCAGCTGCCAACCACACTGAGGATCAATCGTCCATCGTGGGATCAGATTGCTGA 2037 45.51 MSFSAASNLPSGGPHSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGSEQQMPSFNLPSKILCKVVNVNLRAEPDTDEVYAQITLLPESNQNEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHRNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWTNSDWRSLKVQWDEPSSILRPDKVSAWELEPLVASNPLSSQPTQRNKRPRPTVLPSPSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNGNSSLGAVSSNTYWSNANRVENVMDTSSHGANREPIEKKQNTRNGCRLFGIQLLGNSNVDEASPVSTPKMVGEDRPVPPVDTEFDQHSEPSNIHRSDIPSVSCDADKSCLISPVESQSRQIRSCTKVQMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSVKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGETKLSKPDSDSAANHTEDQSSIVGSDC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9012192 9019276 + Hsped.01g00830.1 Hepe01g0083 559193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0083 678 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
Hepe01g0083 678 Gene3D - 548 642 - -
Hepe01g0083 678 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Hepe01g0083 678 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Hepe01g0083 678 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe01g0083 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 643 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe01g0083 678 MobiDBLite consensus disorder prediction 648 678 - -
Hepe01g0083 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677(InterPro)
Hepe01g0083 678 FunFam Auxin response factor 126 230 - -
Hepe01g0083 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Hepe01g0083 678 Gene3D - 291 364 - -
Hepe01g0083 678 Gene3D - 125 230 IPR015300 -
Hepe01g0083 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Hepe01g0083 678 ProSiteProfiles PB1 domain profile. 553 646 IPR053793 -
Hepe01g0083 678 FunFam Auxin response factor 291 363 - -
Hepe01g0083 678 Pfam AUX/IAA family 551 644 IPR033389 -
Hepe01g0083 678 MobiDBLite consensus disorder prediction 362 378 - -
Hepe01g0083 678 MobiDBLite consensus disorder prediction 362 393 - -
Hepe01g0083 678 FunFam Auxin response factor 548 642 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0083 Hepe-Chr1:9012192 Hepe03g0670 Hepe-Chr3:15586492 5.70e-209 dispersed
Hepe01g0083 Hepe-Chr1:9012192 Hepe08g0874 Hepe-Chr8:7925941 1.95e-143 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54756 PF02309 AUX_IAA 1.20E-11 CL0072 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0083 K14486 - csv:101204612 1296.95