Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe01g0154 | ATGGGCTGCATTTGCTCTAAGGGAATTCCAGCAAACGACTATGTTGCTGAGAATCATTCCAAAGAAAGGAGTTTGAAGTCGAGTAGATCTTCCAGACTTCTTGGGACTTCATTGAGGAAAGAAGAACCTGTGTTGAATGCTGATGGAGGGCAAAGTGATGCAATGGCGCGATTGATTTCGAACCAACCTGGGGAAGAGAATGCTGGATCAACACCCGAATCGGATGATGTTGAGAAGGCAGCACCCATTGAAAAAGCTGCCAGTGCCAAGCCACTGCGTCAAGAACGGCCAACTATGGAGGATGGAGCAAAGAGAGTAGAAGTACAAAATAATAATGCAACACCTAGAATAATCAATGTTGTTAATGGGGAAAAGGGGGCTATGGTTATTGCTGGGTGGCCTTCTTGGCTTACATCTGTAGCTGGAGAAGCAATCAATGGATGGATTCCTAGAAAGGCAGACTCTTTTCAGAAGTTGGATAAGATTGGACAAGGAACGTACAGCAGCGTGTACAGGGCCCGCGATGTTGAAACGAACAAGATTGTTGCGTTGAAGAAGGTGCGATTTGCTAACATGGATCCTGAAAGTGTTCGTTTCATGGCCAGGGAAATTCTTATCCTCCGCAAGCTTGACCACCCCAATGTCATGAAGCTTGAAGGTCTTATTACTTCAAGGGTATCTGGCAGTTTGTACCTCATATTTGAGTACATGGAACATGATCTTGCAGGATTGGCTGCAACCCCAGGGATCAAGTTCACTGAATCACAGATAAAATGCTATATGCAACAGCTGCTTTGTGGCCTTGAACATTGCCATGCCCAGGGAGTTTTGCACCGTGACATCAAGGGCTCAAATCTTCTGATTGACAATAGTGGTAATCTAAAGATAGGTGATTTTGGGTTATCAACCTTTTTCCGTTCCCGACAAAAGCAGCCCCTTACAAGTCGTGTGGTAACTTTGTGGTATCGGCCGCCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGTGCTGGTTGTATTCTTGCAGAATTGTATGCTGGGAAGCCTATCATGCCTGGAAGAACAGAGGTGGAACAACTACATAAGATCTTCAAACTTTGTGGCTCCCCTTCTGAAGAATACTGGAAAAAGTCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGATGCGTTGCTGAGACATTCAAAGACTTCCCTTCCCCTGCATTGGCCCTTTTGGATGTCCTTCTTGCGGTTGAACCTGATGGTCGTGGAACAGCTTCGTCTGCCCTTGAAAGCGAGTTCTTTACTACAAAACCGCTTCCCTCGGATCCCTCTGCTTTGCCAAAGTACCCACCAAGCAAGGAATTTGATGCCAAGCTTCGAGACGAGGAAACCCGAAGAAGAAGAGCTCCTATCAGTGCAGCACGTGAACATGAAACAGCTCGAAAGTTTCCCAGAGGATCTAGAGCGATTCCCGCACCAGATGCAAATGCTGAATTGCAGGCATCTATACAGAAGAAACAAGGGCAGCAGAATCCTACAAGTGTCAGTGAAAAGTATAATTCTGAAGAGGACGGTGGCTCTGGCTTTCGCATTGAGCAGCCCCCCAAAGAAGCAACACAAACGCAACCGACTGCTTTGGGTTCTTCACAAAACATGAACGGGAATCAGGGCGATAATCCAAGAGGTTCTTCAGCCGGGCCAAAAGGTGCAGAACTTAGAAACCAGAAATCTTATTTGCAGCATGGTGCTGGACAGTTATCCCGGTATTCCAATTCCGTTGCAGTCCGAGGTGGTTCACGATTCGGCTGCAGTGGAGAAAGTAGTGCTAATTCAAACTGGCCGGGAGAGTCTTTTAATGTGTCATATAACCATTTCAATGGTGGTGAATCTTCAGAAAAGCCTGAATGGGCTCACCATTTACTAGACAGGCCAAAATCTTCATATAAGATAGATGATCAGTCATCTGGAAAAGAGTCTGCTATGAGTTGCCCTCCGAAGAAGAGAATTCACTACTCAGGACCCTTGATACCTCCGGGTGGAAACCTCGAGGAAATGTTAAAAGAGCACGAGAAACAAATCCAGCATGCGGTGCGCAAGGCTCGTATAGACAAAGCTAAGACAAAAAGGACATACAATGACAAAGGTCAAACGGAATCGTTGCTTCACCATGTGAGAAATGGAAATTGA | 2205 | 45.8 | MGCICSKGIPANDYVAENHSKERSLKSSRSSRLLGTSLRKEEPVLNADGGQSDAMARLISNQPGEENAGSTPESDDVEKAAPIEKAASAKPLRQERPTMEDGAKRVEVQNNNATPRIINVVNGEKGAMVIAGWPSWLTSVAGEAINGWIPRKADSFQKLDKIGQGTYSSVYRARDVETNKIVALKKVRFANMDPESVRFMAREILILRKLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLAATPGIKFTESQIKCYMQQLLCGLEHCHAQGVLHRDIKGSNLLIDNSGNLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSAGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCVAETFKDFPSPALALLDVLLAVEPDGRGTASSALESEFFTTKPLPSDPSALPKYPPSKEFDAKLRDEETRRRRAPISAAREHETARKFPRGSRAIPAPDANAELQASIQKKQGQQNPTSVSEKYNSEEDGGSGFRIEQPPKEATQTQPTALGSSQNMNGNQGDNPRGSSAGPKGAELRNQKSYLQHGAGQLSRYSNSVAVRGGSRFGCSGESSANSNWPGESFNVSYNHFNGGESSEKPEWAHHLLDRPKSSYKIDDQSSGKESAMSCPPKKRIHYSGPLIPPGGNLEEMLKEHEKQIQHAVRKARIDKAKTKRTYNDKGQTESLLHHVRNGN | 734 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 26638225 | 26651303 | - | Hsped.01g01540.1 | Hepe01g0154 | 559264 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe01g0154 | 734 | MobiDBLite | consensus disorder prediction | 440 | 576 | - | - | |
| Hepe01g0154 | 734 | ProSiteProfiles | Protein kinase domain profile. | 156 | 440 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Hepe01g0154 | 734 | MobiDBLite | consensus disorder prediction | 18 | 108 | - | - | |
| Hepe01g0154 | 734 | Gene3D | Transferase(Phosphotransferase) domain 1 | 239 | 479 | - | - | |
| Hepe01g0154 | 734 | MobiDBLite | consensus disorder prediction | 459 | 490 | - | - | |
| Hepe01g0154 | 734 | MobiDBLite | consensus disorder prediction | 77 | 103 | - | - | |
| Hepe01g0154 | 734 | MobiDBLite | consensus disorder prediction | 705 | 726 | - | - | |
| Hepe01g0154 | 734 | Coils | Coil | 685 | 705 | - | - | |
| Hepe01g0154 | 734 | Pfam | Protein kinase domain | 156 | 440 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Hepe01g0154 | 734 | SUPERFAMILY | Protein kinase-like (PK-like) | 150 | 447 | IPR011009 | - | |
| Hepe01g0154 | 734 | FunFam | probable serine/threonine-protein kinase At1g54610 | 239 | 480 | - | - | |
| Hepe01g0154 | 734 | Gene3D | Phosphorylase Kinase; domain 1 | 143 | 238 | - | - | |
| Hepe01g0154 | 734 | MobiDBLite | consensus disorder prediction | 540 | 568 | - | - | |
| Hepe01g0154 | 734 | MobiDBLite | consensus disorder prediction | 705 | 734 | - | - | |
| Hepe01g0154 | 734 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 276 | 288 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Hepe01g0154 | 734 | PANTHER | CELL DIVISION PROTEIN KINASE | 155 | 440 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
| Hepe01g0154 | 734 | SMART | serkin_6 | 156 | 440 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Hepe01g0154 | 734 | MobiDBLite | consensus disorder prediction | 653 | 676 | - | - | |
| Hepe01g0154 | 734 | CDD | STKc_CDK9_like | 156 | 440 | - | - | |
| Hepe01g0154 | 734 | MobiDBLite | consensus disorder prediction | 55 | 69 | - | - | |
| Hepe01g0154 | 734 | MobiDBLite | consensus disorder prediction | 506 | 527 | - | - | |
| Hepe01g0154 | 734 | FunFam | probable serine/threonine-protein kinase At1g54610 | 143 | 238 | - | - | |
| Hepe01g0154 | 734 | ProSitePatterns | Protein kinases ATP-binding region signature. | 162 | 185 | IPR017441 | GO:0005524(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe01g0154 | Hepe-Chr1:26638225 | Hepe05g1484 | Hepe-Chr5:64285454 | 1.10e-206 | dispersed | |
| Hepe01g0154 | Hepe-Chr1:26638225 | Hepe01g0473 | Hepe-Chr1:61566435 | 3.35e-37 | wgd | |
| Hepe01g0154 | Hepe-Chr1:26638225 | Hepe02g2055 | Hepe-Chr2:49273026 | 6.47e-19 | wgd | |
| Hepe01g0154 | Hepe-Chr1:26638225 | Hepe04g0241 | Hepe-Chr4:45185773 | 8.79e-48 | wgd | |
| Hepe01g0154 | Hepe-Chr1:26638225 | Hepe06g0383 | Hepe-Chr6:14344402 | 7.61e-231 | wgd | |
| Hepe01g0154 | Hepe-Chr1:26638225 | Hepe07g1598 | Hepe-Chr7:55767256 | 8.34e-168 | wgd | |
| Hepe01g0154 | Hepe-Chr1:26638225 | Hepe07g1035 | Hepe-Chr7:14915394 | 4.55e-232 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 72437 | PF00069 | Pkinase | 6.50E-68 | CL0016 | Hepe | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe01g0154 | - | - | - | 0.0 |