Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g0178 ATGACAATGTCTCGAGTAGTTGTTGTTGCGTTGATGATCTTGCTTTTGGGTATGGCTTGCAATGCCCAACTTTCCTCTACATTTTACGATAAAACTTGTCCCACCGCCCTCAATACTATCCGAACTGTTATTAGGCAAGCCGTTTCTCAAGAGCGTCGAATGGCTGCATCTCTCATTCGCCTCCATTTCCATGATTGTTTCGTTCAAGGTTGTGATGCGTCGATATTGCTTGATGATACTCCCTCTATTATCGGCGAACAAAATGCAGCACCGAATCGAAACTCCGCAAGAGGTTATGGAGTGATACACAAGGCTAAGACTGAAGTTGAGAAGATATGTCCTGGTGTCGTATCTTGTGCAGACATTCTCGCTACGGCCGCAAGAGATGCGTCTTTTTCGGTTGGTGGTCCATCTTGGACAGTAAAGCTTGGAAGAAGAGACTCTACCACTGCAAGCAAAACCCTAGCAGAGAGCGAGCTTCCCCACTTCCAAGAAAGTCTTGATAGACTTATCTCCATTTTTTCAAATAAAGGTCTTAATGCAAGAGATATGGTTGCACTATCAGGTTCTCACACCATAGGACAAGCTCAATGCTTTCTTTTCCGCAATAGAATATACAACCAAAGTAATATTGAGGCAGGATTTGGTAGCACTCGTCGTAGAAATTGTCCGACATCTGGTGGGAATGGAAATTTGGCAGCACTTGATTTAGTCACACCCAATTCCTTTGACAATAACTATTTCAAAAATCTTATTCAAAGAAAAGGATTGCTTGAAACAGATCAAGTCCTCTTTAATGGAGGATCCACGGATAGTATTGTCACAAAGTATAGTAATAATCCATCCACATTCAAATCCGACTTTGCAACTGCAATGATTAAAATGGGAGACATTCAACCGCTCACGGTTCTTGAACTTCTGCTTTGTTATGTTGTGTTCAAGGTGAGAATGGTGGTTGATGAAGATCTTGAAGGGTTTGGCTTCAGTGGAAAGAATGAAGTGATAAATGGAAAAGCAGCAGTGATTGGCTTCTTGTTGTTGTTGGATTTTGATCTCCTAACTGGTAAGGGTCTTCTCAAGGGAACTGGCTTCTTGGACTTCATTTATTCTGCTTCAGATGCTTTCAAATAG 1131 41.82 MTMSRVVVVALMILLLGMACNAQLSSTFYDKTCPTALNTIRTVIRQAVSQERRMAASLIRLHFHDCFVQGCDASILLDDTPSIIGEQNAAPNRNSARGYGVIHKAKTEVEKICPGVVSCADILATAARDASFSVGGPSWTVKLGRRDSTTASKTLAESELPHFQESLDRLISIFSNKGLNARDMVALSGSHTIGQAQCFLFRNRIYNQSNIEAGFGSTRRRNCPTSGGNGNLAALDLVTPNSFDNNYFKNLIQRKGLLETDQVLFNGGSTDSIVTKYSNNPSTFKSDFATAMIKMGDIQPLTVLELLLCYVVFKVRMVVDEDLEGFGFSGKNEVINGKAAVIGFLLLLDFDLLTGKGLLKGTGFLDFIYSASDAFK 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29443129 29446157 + Hsped.01g01780.1 Hepe01g0178 559288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g0178 376 CDD secretory_peroxidase 23 302 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Hepe01g0178 376 FunFam Peroxidase 27 176 - -
Hepe01g0178 376 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Hepe01g0178 376 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Plant peroxidase signature 290 303 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Hepe01g0178 376 ProSiteProfiles Plant heme peroxidase family profile. 23 331 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 SUPERFAMILY Chlorophyll a-b binding protein 318 360 - -
Hepe01g0178 376 Gene3D Peroxidase, domain 2 161 295 - -
Hepe01g0178 376 Gene3D - 27 302 - -
Hepe01g0178 376 SUPERFAMILY Heme-dependent peroxidases 23 302 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 FunFam Peroxidase 161 295 - -
Hepe01g0178 376 Pfam Peroxidase 40 280 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Hepe01g0178 376 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Hepe01g0178 376 PANTHER PEROXIDASE 72-RELATED 11 303 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0178 Hepe-Chr1:29443129 Hepe02g3288 Hepe-Chr2:82486076 4.55e-121 dispersed
Hepe04g0055 Hepe-Chr4:21658232 Hepe01g0178 Hepe-Chr1:29443129 1.18e-24 dispersed
Hepe09g1017 Hepe-Chr9:10506637 Hepe01g0178 Hepe-Chr1:29443129 1.75e-33 dispersed
Hepe01g0178 Hepe-Chr1:29443129 Hepe01g0185 Hepe-Chr1:30392305 2.49e-210 proximal
Hepe01g0177 Hepe-Chr1:29437069 Hepe01g0178 Hepe-Chr1:29443129 8.04e-195 tandem
Hepe01g0178 Hepe-Chr1:29443129 Hepe10g0859 Hepe-Chr10:20071105 2.89e-12 wgd
Hepe01g0178 Hepe-Chr1:29443129 Hepe06g0379 Hepe-Chr6:14277534 1.26e-32 wgd
Hepe01g0178 Hepe-Chr1:29443129 Hepe08g1795 Hepe-Chr8:38911502 1.19e-34 wgd
Hepe01g0178 Hepe-Chr1:29443129 HepeContig65g0003 Hepe-ChrContig65:19462 3.38e-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g0178 K00430 - csv:116403992 532.332